The study of semantics in Genetic Programming (GP) has increased dramatically over the last years due to the fact that researchers tend to report a performance increase in GP when semantic diversity is promoted. However, the adoption of semantics in Evolutionary Multi-objective Optimisation (EMO), at large, and in Multi-objective GP (MOGP), in particular, has been very limited and this paper intends to fill this challenging research area. We propose a mechanism wherein a semantic-based distance is used instead of the widely known crowding distance and is also used as an objective to be optimised. To this end, we use two well-known EMO algorithms: NSGA-II and SPEA2. Results on highly unbalanced binary classification tasks indicate that the proposed approach produces more and better results than the rest of the three other approaches used in this work, including the canonical aforementioned EMO algorithms.