Cluxton, Christopher and Caffrey, Brian E. and Kinsella, Gemma K. and Moynagh, Paul N. and Fares, Mario A. and Fallon, Padraic G. (2015) Functional conservation of an ancestral Pellino protein in helminth species. Scientific Reports, 5 (11687). ISSN 2045-2322

Keane, Orla M. and Toft, Christina and Carretero-Paulet, Lorenzo and Jones, Gary W. and Fares, Mario A. (2014) Preservation of Genetic and Regulatory Robustness in Ancient Gene Duplicates of Saccharomyces cerevisiae. Genome Research, 14. pp. 1-29. ISSN 1088-9051

Fares, Mario A. and Keane, Orla M. and Toft, Christina and Carretero-Paulet, Lorenzo and Jones, Gary W. (2013) The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes. PLos Genetics, 9 (1). e1003176. ISSN 1553-7390

Reardon, Wesley and Fitzpatrick, David A. and Fares, Mario A. and Nugent, Jacqueline M. (2009) Evolution of flower shape in Plantago lanceolata. Plant Molecular Biology, 71 (3). pp. 241-250. ISSN 0167-4412

Codoñer, Francisco M. and O'Dea, Shirley and Fares, Mario A. (2008) Reducing the false positive rate in the non-parametric analysis of molecular coevolution. BMC Evolutionary Biology, 8 (106). ISSN 1471-2148

Lynn, David J. and Higgs, Rowan and Gaines, Susan and Tierney, Joanna and James, Tharappel and Lloyd, Andrew T. and Fares, Mario A. and Mulcahy, Grace and O'Farrelly, Cliona (2004) Bioinformatic discovery and initial characterisation of nine novel antimicrobial peptide genes in the chicken. Immunogenetics, 56 (3). pp. 170-176.

Lynn, David J. and Lloyd, Andrew T. and Fares, Mario A. and O'Farrelly, Cliona (2004) Evidence of Positively Selected Sites in Mammalian a-Defensins. Molecular Biology and Evolution, 21 (5). pp. 819-827.

Fares, Mario A. (2004) SWAPSC: sliding window analysis procedure to detect selective constraints. Bioinformatics, 20 (16). pp. 2867-2868.