Keane, Thomas M., Page, Andrew J., McInerney, James O. and Naughton, Thomas J. (2005) A high-throughput bioinformatics distributed computing platform. In: Proceedings. 18th IEEE Symposium on Computer-Based Medical Systems, 2005. IEEE, pp. 377-382. ISBN 0769523552
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Abstract
In the past number of years the demand for high performance computing has greatly
increased in the area of bioinformatics. The huge increase in size of many genomic
databases has meant that many common tasks in bioinformatics are not possible to complete
in a reasonable amount of time on a single processor. Recently distributed computing has
emerged as an inexpensive alternative to dedicated parallel computing. We have developed a
general-purpose distributed computing platform that is capable of using semi-idle computing
resources to simulate a dedicated computing cluster. We have identified the suitability of a
number of bioinformatics tasks to distributed computing. We briefly outline and evaluate two
distributed bioinformatics programs, DSEARCH and DPRml, which have been developed for
our system.
Item Type: | Book Section |
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Keywords: | Bioinfomatics; distributed computing; web computing; public computing; |
Academic Unit: | Faculty of Science and Engineering > Computer Science |
Item ID: | 234 |
Identification Number: | 10.1109/CBMS.2005.11 |
Depositing User: | Andrew Page |
Date Deposited: | 26 Aug 2005 |
Publisher: | IEEE |
Refereed: | Yes |
Funders: | Irish Research Council for Science Engineering and Technology (IRCSET) |
Related URLs: | |
URI: | https://mural.maynoothuniversity.ie/id/eprint/234 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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