McGowan, Jamie and Fitzpatrick, David A. (2017) Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal. Msphere, 2 (6). e00408-17. ISSN 2379-5042
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Abstract
The oomycetes are a class of microscopic, filamentous eukaryotes within
the stramenopiles-alveolate-Rhizaria (SAR) supergroup and include ecologically significant
animal and plant pathogens. Oomycetes secrete large arsenals of effector
proteins that degrade host cell components, manipulate host immune responses,
and induce necrosis, enabling parasitic colonization. This study investigated the expansion
and evolution of effectors in 37 oomycete species in 4 oomycete orders, including
Albuginales, Peronosporales, Pythiales, and Saprolegniales species. Our results
highlight the large expansions of effector protein families, including glycoside hydrolases,
pectinases, and necrosis-inducing proteins, in Phytophthora species. Speciesspecific
expansions, including expansions of chitinases in Aphanomyces astaci and
Pythium oligandrum, were detected. Novel effectors which may be involved in suppressing
animal immune responses in Ap. astaci and Py. insidiosum were also identified.
Type 2 necrosis-inducing proteins with an unusual phylogenetic history were
also located in a number of oomycete species. We also investigated the "RxLR" effector
complement of all 37 species and, as expected, observed large expansions in
Phytophthora species numbers. Our results provide in-depth sequence information
on all putative RxLR effectors from all 37 species. This work represents an up-to-date
in silico catalogue of the effector arsenal of the oomycetes based on the 37 genomes
currently available.
IMPORTANCE The oomycetes are a class of microscopic, filamentous eukaryotes and
include ecologically significant animal and plant pathogens. Oomycetes secrete large
arsenals of effector proteins that degrade host cell components, manipulate host immune
responses, and induce necrosis, enabling parasitic colonization. In this study,
we catalogued the number and evolution of effectors in 37 oomycete species whose
genomes have been completely sequenced. Large expansions of effector protein
families in Phytophthora species, including glycoside hydrolases, pectinases, and
necrosis-inducing proteins, were observed. Species-specific expansions were detected,
including chitinases in Aphanomyces astaci and Pythium oligandrum. Novel
effectors which may be involved in suppressing animal immune responses were
identified in Ap. astaci and Py. oligandrum. Type 2 necrosis-inducing proteins with an
unusual phylogenetic history were also located. This work represents an up-to-date
in silico catalogue of the effector arsenal of the oomycetes based on the 37 genomes
currently available.
Item Type: | Article |
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Additional Information: | Cite as: Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal Jamie McGowan, David A. Fitzpatrick mSphere Nov 2017, 2 (6) e00408-17; DOI: 10.1128/mSphere.00408-17 https://doi.org/10.1128/mSphere .00408-17. © 2017 McGowan and Fitzpatrick. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license: https://creativecommons.org/licenses/by/4.0/ |
Keywords: | comparative genomics; effectors; evolution; oomycota; secretome; similarity network; |
Academic Unit: | Faculty of Arts,Celtic Studies and Philosophy > Research Institutes > An Foras Feasa |
Item ID: | 11056 |
Identification Number: | 10.1128/mSphere.00408-17 |
Depositing User: | David Fitzpatrick |
Date Deposited: | 18 Sep 2019 14:32 |
Journal or Publication Title: | Msphere |
Publisher: | American Society for Microbiology |
Refereed: | Yes |
Related URLs: | |
URI: | https://mural.maynoothuniversity.ie/id/eprint/11056 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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