Tong, Hua (2023) Squaratides: Sequence-Defined Anion Binding Receptors. PhD thesis, National University of Ireland Maynooth.
![2026-Hua Tong.pdf [thumbnail of 2026-Hua Tong.pdf]](https://mural.maynoothuniversity.ie/style/images/fileicons/text.png)
2026-Hua Tong.pdf
Restricted to Repository staff only until 1 January 2026.
Available under License Creative Commons Attribution Non-commercial Share Alike.
Download (62MB)
Abstract
Anions are ubiquitous in biology, medicine, catalysis and the environment. Due
to their importance in a variety of areas, the selective recognition, sensing and
transport of anions has been a burgeoning area of research for decades,
especially in the field of supramolecular chemistry. Among the increasing and
diverse synthetic anion binding receptors, the squaramide moiety is gaining
popularity in recent years due to various advantageous characteristics that
render it useful for anion binding. This thesis will focus on the synthesis of
several families of a novel peptidomimetic hybrid between peptides and
squaramides; so-called squaratide receptors where their anion binding
behavior will be analyzed in detail.
The thesis will start with a literature review of anions and synthetic anion
binding receptor design and then concentrates on recently reported
squaramide anion binding receptors. The introduction of aims and objectives of
the research will follow.
Chapter 2 introduces a novel family of cyclic squaratide dimers as anion
binding receptors using amino acids, squaramide, and ethylenediamine as
building blocks. The receptors were synthesized by facile and reliable methods
and their structures were fully characterized. The crystal structure of one of the
dimers was obtained which revealed the solid-state conformation of this
macrocycle. The anion binding performance of the dimers was examined by 1H
NMR anion titrations, in which an abnormal shift of the amide NH protons was
observed. The results were plotted by the function of anion concentration and
were fitted using the open-access software BindFit to simulate their binding
stoichiometry. The cyclic squaratide dimers were found to selectively bind to
acetate and benzoate while displaying a moderate affinity for chloride and a
rather weak affinity for sulfate. This behavior was not anticipated when
comparing to previously reported cyclic squaramide and peptide containing
squaramide receptors.
Chapter 3 introduces acyclic squaratide dimers based on their cyclic
counterparts reported in Chapter 2. The receptors were synthesized by
coupling two similar monomers of amino acid-squaramide-ethylenediamine
monomers. The binding performance was explored by 1H NMR titrations where
the acyclic squaratide dimers showed relatively weak overall selectivity and
affinity for variously anions compared to their cyclic analogues. This has
proven the importance of cyclic structure as a method of pre-organization of
binding sites in anion binding receptors. By comparing the 1H NMR spectra of
cyclic and acyclic squaratide dimers, a postulation was put forward about the
intramolecular hydrogen bonding within the cyclic squaratide dimers and its
impact on the anion recognition and binding process, which eventually caused
a possible conformational change as well as the previously mentioned
abnormal shift of amide NH protons in Chapter 2.
Chapter 4 introduces the cyclic squaratide polymers in order to exploit the
availability of enlarging the binding cavity and the addition of hydrogen bond
donors. Trimers and tetramers of L-Phe, D-Phe and Boc-Lys derivatives were
successfully prepared by solid phase peptide synthesis method and the
polymers were characterized by a variety of means such as NMR, IR and
HRMS. The anion titrations were performed where the chirality of L/D-Phe
polymers was found not playing an important role in anion recognition and
binding selectivity. The overall anion binding performance of cyclic squaratide
polymers were outmatched by cyclic squaratide dimers, which was attributed
to over-enlarged cavity and complicated binding behavior brought by multiple
anion binding sites.
Chapter 5 explores the binding performance of several bis-amino acid
squaramide compounds which were reported a long time ago yet were never
considered as anion binding receptors. The anion titrations of these
compounds displayed of high affinity, yet complicated binding behaviors for
oxoanions like phosphate monobasic, acetate and benzoate anions. An
esterified bis-AA squaramide receptor, bis-(Ala-OMe) squaramide was then
synthesized as a control and was titrated with acetate and turned out to display
simplified binding behavior and improved binding affinity for acetate, revealing
that the carboxylic groups in bis-AA squaramides were interfering the anion
recognition and binding, thus complicating the overall anion binding behaviors.
Item Type: | Thesis (PhD) |
---|---|
Keywords: | Squaratides; Sequence-Defined Anion Binding Receptors; |
Academic Unit: | Faculty of Science and Engineering > Chemistry |
Item ID: | 20062 |
Depositing User: | IR eTheses |
Date Deposited: | 24 Jun 2025 11:29 |
URI: | https://mural.maynoothuniversity.ie/id/eprint/20062 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
Repository Staff Only (login required)
Downloads
Downloads per month over past year