Article

Cullen, Merissa G., Bliss, Liam, Stanley, Dara A. and Carolan, James C. (2023) Investigating the effects of glyphosate on the bumblebee proteome and microbiota. Science of The Total Environment, 864 (161074). pp. 1-16. ISSN 0048-9697

Lillis, Peter E., Kennedy, Ian P., Carolan, James C. and Griffin, Christine T. (2023) Low-temperature exposure has immediate and lasting effects on the stress tolerance, chemotaxis and proteome of entomopathogenic nematodes. Parasitology, 150 (1). pp. 15-28. ISSN 0031-1820

López-Ballesteros, Ana, Delaney, Aoife, Quirke, James, Stout, Jane C., Saunders, Matthew, Carolan, James C., White, Blánaid and Stanley, Dara A. (2022) Assessing availability of European plant protection product data: an example evaluating basic area treated. PeerJ, 10. e13586. ISSN 2167-8359

Margalit, Anatte, Sheehan, David, Carolan, James C. and Kavanagh, Kevin (2022) Exposure to the Pseudomonas aeruginosa secretome alters the proteome and secondary metabolite production of Aspergillus fumigatus. Microbiology, 168 (3). ISSN 1350-0872

Margalit, Anatte, Carolan, James C. and Walsh, Fiona (2022) Global protein responses of multidrug resistance plasmid-containing Escherichia coli to ampicillin, cefotaxime, imipenem and ciprofloxacin. Journal of Global Antimicrobial Resistance, 28. pp. 90-96. ISSN 22137165

Margalit, Anatte, Carolan, James C. and Walsh, Fiona (2022) Global protein responses of multidrug resistance plasmid-containing Escherichia coli to ampicillin, cefotaxime, imipenem and ciprofloxacin. Journal of Global Antimicrobial Resistance, 28. pp. 90-96. ISSN 22137165

Tissenbaum, Heidi A., Lillis, Peter E., Griffin, Christine T. and Carolan, James C. (2022) The effect of temperature conditioning (9°C and 20°C) on the proteome of entomopathogenic nematode infective juveniles. PLOS ONE, 17 (4). e0266164. ISSN 1932-6203

Margalit, Anatte, Carolan, James C. and Kavanagh, Kevin (2021) Bacterial Interactions with Aspergillus fumigatus in the Immunocompromised Lung. Microorganisms, 9 (2). p. 435. ISSN 2076-2607

Byrne, Stephen, Schughart, Maximilian, Carolan, James C., Gaffney, Michael, Thorpe, Peter, Malloch, Gaynor, Wilkinson, Tom, McNamara, Louise and Scofield, S (2021) Genome sequence of the English grain aphid, Sitobion avenae and its endosymbiont Buchnera aphidicola. G3 Genes|Genomes|Genetics, 12 (3). pp. 1-8. ISSN 2160-1836

Vickneswaran, Mathavan, Carolan, James C. and White, Blánaid (2021) Simultaneous determination of pesticides from soils: a comparison between QuEChERS extraction and Dutch mini-Luke extraction methods. Analytical Methods, 13 (46). pp. 5638-5650. ISSN 1759-9660

Margalit, Anatte, Carolan, James C., Sheehan, David and Kavanagh, Kevin (2020) The Aspergillus fumigatus Secretome Alters the Proteome of Pseudomonas aeruginosa to Stimulate Bacterial Growth: Implications for Co-infection. Molecular and Cellular Proteomics (MCP), 19 (8). pp. 1346-1359. ISSN 1535-9476

Margalit, Anatte, Kavanagh, Kevin and Carolan, James C. (2020) Characterization of the proteomic response of A549 cells following sequential exposure to Aspergillus fumigatus and Pseudomonas aeruginosa. Journal of Proteome Research, 19. pp. 279-291. ISSN 1535-3893

Colgan, Thomas J., Carolan, James C., Sumner, Seirian, Blaxter, Mark L. and Brown, Mark J.F. (2020) Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens. Insect Molecular Biology, 29 (2). pp. 170-182. ISSN 0962-1075

Coughlan, Patricia, Carolan, James C., Hook, Ingrid L.I., Kilmartin, Lisa and Hodkinson, Trevor R. (2020) Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions. Horticulturae, 6 (1). pp. 1-16. ISSN 2311-7524

Coughlan, Patricia, Carolan, James C., Hook, Ingrid, Kilmartin, Lisa and Hodkinson, Trevor (2020) Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions. Horticulturae, 6 (1). p. 19. ISSN 2311-7524

Green, Dannielle S., Colgan, Thomas J., Thompson, Richard C. and Carolan, James C. (2019) Exposure to microplastics reduces attachment strength and alters the haemolymph proteome of blue mussels (Mytilus edulis). Environmental Pollution, 246. pp. 423-434. ISSN 1873-6424

Cullen, Merissa, Thompson, Linzi J., Carolan, James C., Stout, Jane C. and Stanley, Dara A. (2019) Fungicides, herbicides and bees: A systematic review of existing research and methods. PLoS ONE, 14 (12). e0225743. ISSN 1932-6203

Colgan, Thomas J., Finlay, Sive, Brown, Mark J.F. and Carolan, James C. (2019) Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause. BMC Genomics, 20 (959). ISSN 1471-2164

Mangan, Rosie, Carolan, James C. and Baars, Jan-Robert (2019) Molecular characterization of Hydrellia lagarosiphon, a leaf mining biological control agent for Lagarosiphon major, reveals weak variance across large geographic areas in South Africa. Biological Control, 132. pp. 8-15. ISSN 1049-9644

Deslyper, Gwendoline, Holland, Celia V., Colgan, Thomas J. and Carolan, James C. (2019) The liver proteome in a mouse model for Ascaris suum resistance and susceptibility: evidence for an altered innate immune response. Parasites & Vectors, 12 (402). ISSN 1756-3305

Deslyper, Gwendoline, Doherty, Derek G., Carolan, James C. and Holland, Celia V. (2019) The role of the liver in the migration of parasites of global significance. Parasites & Vectors, 12 (531). ISSN 1756-3305

Eitle, Markus Walter, Carolan, James C., Griesser, Michaela and Forneck, Astrid (2019) The salivary gland proteome of root-galling grape phylloxera (Daktulosphaira vitifoliae Fitch) feeding on Vitis spp. PLoS ONE, 14 (12). e0225881. ISSN 1932-6203

Prŷs-Jones, Oliver E, Williams, Paul H. and Carolan, James C. (2018) Bumblebees of the Azores (Apidae: Bombus). Journal of Natural History, 52 (5-6). pp. 345-349. ISSN 0022-2933

Boulain, Hélène, Legeai, Fabrice, Guy, Endrick, Morlière, Stéphanie, Douglas, Nadine E., Oh, Jonghee, Murugan, Marimuthu, Smith, Michael, Jaquiéry, Julie, Peccoud, Jean, White, Frank F., Carolan, James C., Simon, Jean-Christophe and Sugio, Akiko (2018) Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants. Genome Biology and Evolution, 10 (6). pp. 1554-1572. ISSN 1759-6653

Surlis, Carla, Carolan, James C., Coffey, Mary F. and Kavanagh, Kevin (2018) Quantitative proteomics reveals divergent responses in Apis mellifera worker and drone pupae to parasitization by Varroa destructor. Journal of Insect Physiology, 107. pp. 291-301. ISSN 0022-1910

McNamara, Louise, Griffin, Christine, Fitzpatrick, David A., Kavanagh, Kevin and Carolan, James C. (2018) The effect of entomopathogenic fungal culture filtrate on the immune response and haemolymph proteome of the large pine weevil, Hylobius abietis. Insect Biochemistry and Molecular Biology, 101. pp. 1-13. ISSN 0965-1748

McNamara, Louise, Carolan, James C., Griffin, Christine, Fitzpatrick, David A. and Kavanagh, Kevin (2017) The effect of entomopathogenic fungal culture filtrate on the immune response of the greater wax moth, Galleria mellonella. Journal of Insect Physiology, 100. pp. 82-92. ISSN 0022-1910

Deslyper, Gwendoline, Colgan, Thomas J., Cooper, Andrew J.R., Holland, Celia V. and Carolan, James C. (2016) A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model. PLoS Neglected Tropical Diseases, 10 (8). ISSN 1935-2727

Surlis, Carla, Carolan, James C., Coffey, Mary F. and Kavanagh, Kevin (2016) Proteomic analysis of Bayvarol® resistance mechanisms in the honey bee parasite Varroa destructor. Journal of Apicultural Research, 55 (1). pp. 49-64. ISSN 2078-6913

Zhao, Chaoyang, Escalante, Lucio Navarro, Chen, Hang, Benatti, Thiago R., Qu, Jiaxin, Chellapilla, Sanjay, Waterhouse, Robert M., Wheeler, David, Andersson, Martin N., Bao, Riyue, Batterton, Matthew, Behura, Susanta K., Blankenburg, Kerstin P., Caragea, Doina, Carolan, James C., Coyle, Marcus, El-Bouhssini, Mustapha, Francisco, Liezl, Friedrich, Markus, Gill, Navdeep, Grace, Tony, Grimmelikhuijzen, Cornelis J.P., Han, Yi, Hauser, Frank, Herndon, Nicolae, Holder, Michael, Ioannidis, Panagiotis, Jackson, LaRonda, Javaid, Mehwish, Jhangiani, Shalini N., Johnson, Alisha J., Kalra, Divya, Korchina, Viktoriya, Kovar, Christie, Lara, Fremiet, Lee, Sandra L., Liu, Xuming, Löfstedt, Christer, Mata, Robert, Mathew, Tittu, Muzny, Donna M., Nagar, Swapnil, Nazareth, Lynne V., Okwuonu, Geoffrey, Ongeri, Fiona, Perales, Lora, Peterson, Brittany F., Pu, Ling-Ling, Robertson, Hugh M., Schemerhorn, Brandon J., Scherer, Steven E., Shreve, Jacob T., Simmons, DeNard, Subramanyam, Subhashree, Thornton, Rebecca, Xue, Kun, Weissenberger, George M., Williams, Christie E., Worley, Kim C., Zhu, Dianhui, Zhu, Yiming, Harris, Marion O., Shukle, Richard H., Weren, John H., Zdobnov, Evgeny M., Chen, Ming-Shun, Brown, Susan J., Stuart, Jeffery J. and Richards, Stephen (2015) A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor. Current Biology, 25. pp. 613-620. ISSN 0960-9822

Browne, Niall, Surlis, Carla, Maher, Amie, Gallagher, Clair, Carolan, James C., Clynes, Martin and Kavanagh, Kevin (2015) Prolonged pre-incubation increases the susceptibility of Galleria mellonella larvae to bacterial and fungal infection. Virulence, 6 (5). pp. 458-465. ISSN 2150-5594

Scriven, Jessica J., Woodall, Lucy C., Tinsley, Matthew C., Knight, Mairi E., Williams, Paul H., Carolan, James C., Brown, Mark J.F. and Goulson, Dave (2015) Revealing the hidden niches of cryptic bumblebees in Great Britain: Implications for conservation. Biological Conservation, 182. pp. 126-133. ISSN 0006-3207

Barribeau, Seth M., Sadd, Ben M., du Plessis, Louis, Brown, Mark J.F., Buechel, Severine D., Chappelle, Kaat, Carolan, James C., Christiaens, Oliver, Colgan, Thomas J., Erler, Silvio, Evans, Jay, Helbing, Sophie, Karaus, Elke, Lattorff, H. Michael, Marxer, Monica, Meeus, Ivan, Näpflin, Kathrin, Niu, Jinzhi, Schmid-Hempe, Regula, Smagghe, Guy, Waterhouse, Robert M., Yu, Na, Zdobnov, Evgeny and Schmid-Hempel, Paul (2015) A depauperate immune repertoire precedes evolution of sociality in bees. Genome Biology, 16 (83). pp. 1-20. ISSN 1465-6906

Sadd, Ben M., Barribeau, Seth M., Bloch, Guy, de Graaf, Dirk C., Dearden, Peter, Elsik, Christine G., Gadau, Jürgen, Grimmelikhuijzen, Cornelis J.P., Hasselmann, Martin, Lozier, Jeffrey D., Robertson, Hugh M., Smagghe, Guy, Stolle, Eckart, Van Vaerenbergh, Matthias, Waterhouse, Robert M., Bornberg-Bauer, Erich, Klasberg, Steffen, Bennett, Anna K., Câmara, Francisco, Guigó, Roderic, Hoff, Katharina, Mariotti, Marco, Munoz-Torres, Monica, Murphy, Terence, Santesmasses, Didac, Amdam, Gro V., Beckers, Matthew, Beye, Martin, Biewer, Matthias, Bitondi, Márcia M.G., Blaxter, Mark L., Bourke, Andrew F.G., Brown, Mark J.F., Buechel, Severine D., Cameron, Rossanah, Cappelle, Kaat, Carolan, James C., Christiaens, Olivier, Ciborowski, Kate L., Clarke, David F., Colgan, Thomas J., Collins, David H., Cridge, Andrew G., Dalmay, Tamas, Dreier, Stephanie, du Plessis, Louis, Duncan, Elizabeth, Erler, Silvio, Evans, Jay, Falcon, Tiago, Flores, Kevin, Freites, Flávia C.P., Fuchikawa, Taro, Gempe, Tanja, Hartfelder, Klaus, Hauser, Frank, Helbing, Sophie, Humann, Fernanda C., Irvine, Frano, Jermiin, Lars S., Johnson, Claire E., Johnson, Reed M., Jones, Andrew K., Kadowaki, Tatsuhiko, Kidner, Jonathan H., Koch, Vasco, Köhler, Arian, Kraus, F. Bernhard, Lattorff, H. Michael, Leask, Megan, Lockett, Gabrielle A., Mallon, Eamonn B., Marco Antonio, David S., Marxer, Monica, Meeus, Ivan, Moritz, Robin F.A., Nair, Ajay, Näpflin, Kathrin, Nissen, Inga, Niu, Jinzhi, Nunes, Francis M.F., Oakeshott, John G., Osborne, Amy, Otte, Marianne, Pinheiro, Daniel, Rossié, Nina, Rueppell, Olav, Santos, Carolina G., Schmid-Hempel, Regula, Schmitt, Björn D., Scheulte, Christina, Simões, Zilá L.P., Soares, Michelle P.M., Swevers, Luc, Winnebeck, Eva C., Wolschin, Florian, Yu, Na, Zdobnov, Evgeny M., Aqrawi, Peshtewani K., Blankenburg, Kerstin P., Coyle, Marcus, Francisco, Liezl, Hernandez, Alvaro G., Holder, Michael, Hudson, Matthew E., Jackson, LaRonda, Jayaseelan, Joy, Joshi, Vandita, Kovar, Christie, Lee, Sandra L., Mata, Robert, Mathew, Tittu, Newsham, Irene F., Ngo, Robert, Okwuonu, Geoffrey, Pham, Christopher, Pu, Ling-Ling, Saada, Nehad, Santibanez, Jireh, Simmons, DeNard, Thornton, Rebecca, Venkat, Aarti, Walden, Kimberley K.O., Wu, Yuan-Qing, Debyser, Griet, Devreese, Bart, Asher, Claire, Blommaert, Julie, Chipman, Ariel D., Chittka, Lars, Fouks, Bertrand, Liu, Jisheng, O'Neill, Meaghan P., Sumner, Seirian, Puiu, Daniela, Qu, Jiaxin, Salzberg, Steven L., Scherer, Steven E., Muzny, Donna M., Richards, Stephen, Robinson, Gene E., Gibbs, Richard A., Schmid-Hempel, Paul and Worley, Kim C. (2015) The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology, 16 (76). pp. 1-31. ISSN 1465-6906

Rao, Sohail Ahmad Khan, Carolan, James C. and Wilkinson, Thomas L. (2013) Proteomic Profiling of Cereal Aphid Saliva Reveals Both Ubiquitous and Adaptive Secreted Proteins. PLoS ONE, 8 (2). e57413. ISSN 1932-6203

Carolan, James C., Murray, Tomas E., Fitzpatrick, Una, Crossley, John, Schmidt, Hans, Cederberg, Bjorn, McNally, Luke, Paxton, Robert J., Williams, Paul H. and Brown, Mark J.F. (2012) Colour Patterns Do Not Diagnose Species: Quantitative Evaluation of a DNA Barcoded Cryptic Bumblebee Complex. PLoS ONE, 7 (1). e29251. ISSN 1932-6203

Williams, Paul H., An, Jiandong, Brown, Mark J.F., Carolan, James C., Goulson, Dave, Huang, Jiaxing and Ito, Masao (2012) Cryptic Bumblebee Species: Consequences for Conservation and the Trade in Greenhouse Pollinators. PLoS ONE, 7 (3). e32992. ISSN 1932-6203

Williams, Paul H., Brown, Mark J.F., Carolan, James C., An, Jiandong, Goulson, Dave, Aytekin, A. Murat, Best, Lincoln R., Byvaltsev, Alexandr M., Cederberg, Bjorn, Dawson, Robert, Huang, Jiaxing, Ito, Masao, Monfared, Alireza, Raina, Rifat H., Schmid-Hempel, Paul, Sheffield, Cory S., Šima, Peter and Xie, Zenghua (2012) Unveiling cryptic species of the bumblebee subgenus Bombus s. str. worldwide with COI barcodes (Hymenoptera: Apidae). Systematics and Biodiversity, 10 (1). pp. 21-56. ISSN 1477-2000

Williams, Paul H., Brown, Mark J.F., Carolan, James C., An, Jiandong, Goulson, Dave, Aytekin, A. Murat, Best, Lincoln R., Byvaltsev, Alexandr M., Cederberg, Bjorn, Dawson, Robert, Huang, Jiaxing, Ito, Masao, Monfared, Alireza, Raina, Rifat H., Schmid-Hempel, Paul, Sheffield, Cory S., Šima, Peter and Xie, Zenghua (2012) Unveiling cryptic species of the bumblebee subgenus Bombus s. str. worldwide with COI barcodes (Hymenoptera: Apidae). Systematics and Biodiversity, 10 (1). pp. 21-56. ISSN 1477-2000

Colgan, Thomas J., Carolan, James C., Bridgett, Stephen J., Sumner, Seirian, Blaxter, Mark L. and Brown, Mark J.F. (2011) Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris. BMC Genomics, 12 (623). pp. 1-20. ISSN 1471-2164

Carolan, James C., Caragea, Doina, Reardon, Karen T., Mutti, Navdeep S., Dittmer, Neal, Pappan, Kirk, Cui, Feng, Castaneto, Marisol, Poulain, Julie, Dossat, Carole, Tagu, Denis, Reese, John C., Reeck, Gerald R., Wilkinson, Thomas L. and Edwards, Owain R. (2011) Predicted Effector Molecules in the Salivary Secretome of the Pea Aphid (Acyrthosiphon pisum): A Dual Transcriptomic/Proteomic Approach. Journal of Proteome Research, 10 (4). pp. 1505-1518. ISSN 1535-3893

Gibbs, Richard A., Kovar, Christie, Fowler, Gerald R., Nazareth, Lynne V., Atsushi, Nakabachi, Worley, Kim C., Tagu, Denis, Richards, Stephen, Gabaldon, Toni, Rispe, Claude, Quesneville, Hadi, Douglas, Angela, Shigenobu, Shuji, Moran, Nancy, Barribeau, Seth M., Gerardo, Nichole M., Ghanim, Murad, Chang, Chun-che, Davis, Gregory K., Rider Jr., Stanley Dean, Walsh, Thomas K., Brisson, Jennifer A., Miura, Toru, Srinivasan, Dayalan, Willson, Alex C.C., Jaubert-Possamai, Stephanie, Robertson, Hugh M., Field, Linda M., Jander, Georg, Carolan, James C., Edwards, Owain R., Tamborindeguy, Cecilia, Martinez-Torres, David, Dale, Richard P. and Charles, Hubert (2010) Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biology, 8 (2). e1000313. ISSN 1545-7885

Wang, Yulang, Carolan, James C., Hao, FuHua, Nicholson, Jeremy K., Wilkinson, Thomas L. and Douglas, Angela E. (2010) Integrated Metabonomic-Proteomic Analysis of an Insect-Bacterial Symbiotic System. Journal of Proteome Research, 9 (3). pp. 1257-1267. ISSN 1535-3893

Nic An Ultaigh, Sinéad, Carolan, James C., Britton, Collette, Murray, Linda and Ryan, Michael F. (2009) A cathepsin L-like protease from Strongylus vulgaris: An orthologue of Caenorhabditis elegans CPL-1. Experimental Parasitology, 121 (4). pp. 293-299. ISSN 0014-4894

Carolan, James C., Fitzroy, Carol I.J., Ashton, Peter D., Douglas, Angela E. and Wilkinson, Thomas L. (2009) The secreted salivary proteome of the pea aphid Acyrthosiphon pisum characterised by mass spectrometry. Proteomics, 9 (9). pp. 2457-2467. ISSN 1615-9853

Carolan, James C., Hook, Ingrid L.I., Chanse, Mark W., Kadereit, Joachim W. and Hodkinson, Trevor R. (2006) Phylogenetics of Papaver and Related Genera Based on DNA Sequences from ITS Nuclear Ribosomal DNA and Plastid trnL Intron and trnL–F Intergenic Spacers. Annals of Botany, 98 (1). pp. 141-155. ISSN 0305-7364

Carolan, James C., Hook, Ingrid L.I., Walsh, J.J. and Hodkinson, Trevor R. (2002) Using AFLP Markers for Species Differentiation and Assessment of Genetic Variability of in Vitro-Cultured Papaver Bracteatum (Section Oxytona). In Vitro Cellular & Developmental Biology - Plant, 38 (3). pp. 300-307.

Book Section

Rao, Sohail Ahmad Khan, Carolan, James C. and Wilkinson, Thomas L. (2016) Proteomic Insights into the Hidden World of Phloem Sap Feeding. In: Management of Insect Pests to Agriculture. Springer International Publishing, pp. 49-61. ISBN 978-3-319-24047-3

Will, Torsten, Carolan, James C. and Wilkinson, Thomas L. (2012) Breaching the Sieve Element—The Role of Saliva as the Molecular Interface between Aphids and the Phloem. In: Phloem: Molecular Cell Biology, Systemic Communication, Biotic Interactions. Wiley-Blackwell, pp. 310-327. ISBN 9780470958605