2023

Do, Thi Thuy, Smyth, Cian, Crispie, Fiona, Burgess, Catherine, Brennan, Fiona and Walsh, Fiona (2023) Comparison of soil and grass microbiomes and resistomes reveals grass as a greater antimicrobial resistance reservoir than soil. Science of The Total Environment, 857. p. 159179. ISSN 0048-9697

Tyrrell, Ciara, Do, Thi Thuy, Leigh, Robert J., Burgess, Catherine M., Brennan, Fiona P. and Walsh, Fiona (2023) Differential impact of swine, bovine and poultry manure on the microbiome and resistome of agricultural grassland. Science of The Total Environment, 886. p. 163926. ISSN 0048-9697

2022

Do, Thi Thuy, Nolan, Stephen, Hayes, Nicky, O'Flaherty, Vincent, Burgess, Catherine, Brennan, Fiona and Walsh, Fiona (2022) Metagenomic and HT-qPCR analysis reveal the microbiome and resistome in pig slurry under storage, composting, and anaerobic digestion. Environmental Pollution, 305 (119271). pp. 1-11. ISSN 02697491

2021

Delaney, Sarah, Do, Thi Thuy, Corrigan, Aoife, Murphy, Richard and Walsh, Fiona (2021) Investigation into the effect of mannan-rich fraction supplementation on the metagenome of broiler chickens. Microbial Genomics, 7 (7). pp. 1-12. ISSN 2057-5858

2020

Rodriguez-Mozaz, Sara, Vaz-Moreira, Ivone, Varela Della Giustina, Saulo, Llorca, Marta, Barceló, Damià, Schubert, Sara, Berendonk, Thomas U., Michael-Kordatou, Irene, Fatta-Kassinos, Despo, Luis Martinez, Jose, Elpers, Christian, Henriques, Isabel, Jaeger, Thomas, Schwartz, Thomas, Paulshus, Erik, O'Sullivan, Kristin, Pärnänen, Katariina M. M., Virta, Marko, Do, Thi Thuy, Walsh, Fiona and Manaia, Célia M. (2020) Antibiotic residues in final effluents of European wastewater treatment plants and their impact on the aquatic environment. Environment International, 140 (105733). pp. 1-11. ISSN 0160-4120

Smyth, Cian, O’Flaherty, Aidan, Walsh, Fiona and Do, Thi Thuy (2020) Antibiotic resistant and extended-spectrum β-lactamase producing faecal coliforms in wastewater treatment plant effluent. Environmental Pollution, 262. p. 114244. ISSN 02697491

2019

Pärnänen, Katariina M. M., Narciso-da-Rocha, Carlos, Kneis, David, Berendonk, Thomas U., Cacace, Damlano, Do, Thi Thuy, Elpers, Christian, Fatta-Kassinos, Despo, Henriques, Isabel, Jaeger, Thomas, Karkman, Antti, Martinez, Jose Luis, Michael, Stella G., Michael-Kordatou, Irene, O’Sullivan, Kristin, Rodriguez-Mozaz, Sara, Schwartz, Thomas, Sheng, Hongjie, Sørum, Henning, Stedtfeld, Robert D., Tiedje, James M., Varela Della Giustina, Saulo, Walsh, Fiona, Vaz-Moreira, Ivone, Virta, Marko and Manaia, Célia M. (2019) Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence. Science Advances, 5 (3). ISSN 2375-2548

2018

Karkman, Antti, Do, Thi Thuy, Walsh, Fiona and Virta, Marko P.J. (2018) Antibiotic-Resistance Genes in Waste Water. Trends in Microbiology, 26 (3). pp. 220-228. ISSN 0966-842X

Do, Thi Thuy, Tamames, Javier, Stedtfeld, Robert D., Guo, Xueping, Murphy, Sinead, Tiedje, James M. and Walsh, Fiona (2018) Antibiotic Resistance Gene Detection in the Microbiome Context. Microbial Drug Resistance, 24 (5). pp. 542-546. ISSN 1076-6294