Collins, Cassandra, Hurley, Rachel, Almutlagah, Nada, O'Keeffe, Grainne, Keane, Thomas M., Fitzpatrick, David A. and Owens, Rebecca A. (2017) Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles. Microorganisms, 5 (3). p. 60. ISSN 2076-2607

O’Keeffe, Grainne, Hammel, Stephen, Owens, Rebecca A., Keane, Thomas M., Fitzpatrick, David A., Jones, Gary W. and Doyle, Sean (2014) RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus. BMC Genomics, 15 (894). pp. 1-26. ISSN 1471-2164

Collins, Cassandra, Keane, Thomas M., Turner, Daniel J., O'Keefe, Grainne, Fitzpatrick, David A. and Doyle, Sean (2013) Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, Armillaria mellea: Toward a New Infection Model System. Journal of Proteome Research, 12. pp. 2552-2570. ISSN 1535-3893

Page, Andrew J., Keane, Thomas M. and Naughton, Thomas J. (2010) Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system. Journal of Parallel and Distributed Computing, 70 (7). pp. 758-766. ISSN 0743-7315

Page, Andrew J., Keane, Thomas M. and Naughton, Thomas J. (2008) Scheduling in a dynamic heterogeneous distributed system using estimation error. Journal of Parallel and Distributed Computing, 68 (11). pp. 1452-1462. ISSN 0743-7315

Keane, Thomas M., Naughton, Thomas J. and McInerney, James O. (2007) MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids Research, 35 (Web Server Issue). W33-W37. ISSN 0305-1048

Maguire, Rebecca, Maguire, Phil and Keane, Thomas M. (2007) Understanding Surprise: Can Less Likely Events Be Less Surprising? In: 29th Cognitive Science Society Conference, 1-4 August 2007, Nashville, Tennessee.

Page, Andrew J., Coyle, Shirley, Keane, Thomas M., Naughton, Thomas J., Markham, Charles and Ward, Tomas E. (2006) Distributed Monte Carlo Simulation of Light Transportation in Tissue. In: IPDPS 2006. 20th International Parallel and Distributed Processing Symposium, 2006. IEEE, pp. 1-4. ISBN 1424400546

Keane, Thomas M., Page, Andrew J., McInerney, James O. and Naughton, Thomas J. (2005) A high-throughput bioinformatics distributed computing platform. In: Proceedings. 18th IEEE Symposium on Computer-Based Medical Systems, 2005. IEEE, pp. 377-382. ISBN 0769523552

Page, Andrew J., Keane, Thomas M. and Naughton, Thomas J. (2005) Bioinformatics on a Heterogeneous Java Distributed System. In: Proceedings. 19th IEEE International Parallel and Distributed Processing Symposium, 2005. IEEE Computer Society. ISBN 0769523129

Keane, Thomas M., Allen, Richard, Naughton, Thomas J., McInerney, James O. and Waldron, John (2003) Distributed Java Platform with Programmable MIMD Capabilities. In: FIDJI 2002: Scientific Engineering for Distributed Java Applications. Lecture Notes in Computer Science (LNCS) (2604). Springer, pp. 122-131. ISBN 3540006796

Keane, Thomas M., Allen, Richard, Naughton, Thomas J., McInerney, James O. and Waldron, John (2002) Distributed computing for DNA analysis. In: PPPJ '02/IRE '02 Proceedings of the inaugural conference on the Principles and Practice of programming, 2002 and Proceedings of the second workshop on Intermediate representation engineering for virtual machines, 2002. National University of Ireland Maynooth, pp. 65-70. ISBN 0901519871