McGill, Lorraine M. and Fitzpatrick, David A. and Pisani, Davide and Burnell, Ann (2017) Estimation of phylogenetic divergence times in Panagrolaimidae and other nematodes using relaxed molecular clocks calibrated with insect and crustacean fossils. Nematology, 19 (8). pp. 899-913. ISSN 1568-5411

Haggerty, Leanne S. and Jachiet, Pierre-Alain and Hanage, William P. and Fitzpatrick, David A. and Lopez, Philippe and O'Connell, Mary J. and Pisani, Davide and Wilkinson, Mark and Bapteste, Eric and McInerney, James O. (2014) A Pluralistic Account of Homology: Adapting the Models to the Data. Molecular Biology and Evolution, 31 (3). pp. 501-506. ISSN 0737-4038

Feuda, Roberto and Hamilton, Sinead C. and McInerney, James O. and Pisani, Davide (2012) Metazoan opsin evolution reveals a simple route to animal vision. Proceedings of the National Academy of Sciences . ISSN 1091-6490

Sperling, Erik A. and Peterson, Devin J. and Pisani, Davide (2009) Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa. Molecular Biology and Evolution, 26 (10). pp. 2261-2274. ISSN 0737-4038

Pisani, Davide and Mohun, Samantha and Harris, Simon and McInerney, James and Wilkinson, Mark (2006) Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Current Biology, 16 (9). pp. 318-319.

Wilkinson, Mark and Thorley, Joseph L. and Pisani, Davide and Lapointe, Francois-Joseph and McInerney, James O. (2004) Some Desiderata for Liberal Supertrees. In: Phylogenetic Supertrees. Computational Biology book series (COBO) (4). Springer, pp. 227-246. ISBN 9781402023293