Tyrrell, Ciara, Do, Thi Thuy, Leigh, Robert J., Burgess, Catherine M., Brennan, Fiona P. and Walsh, Fiona (2023) Differential impact of swine, bovine and poultry manure on the microbiome and resistome of agricultural grassland. Science of The Total Environment, 886. p. 163926. ISSN 0048-9697
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Abstract
Land spreading of animal manure is an essential process in agriculture. Despite the importance of grassland in global
food security the potential of the grass phyllosphere as a reservoir of antimicrobial resistance (AMR) is unknown. Additionally, the comparative risk associated with different manure sources is unclear. Due to the One Health nature of
AMR there is an urgent need to fully understand the risk associated with AMR at the agriculture - environmental nexus.
We performed a grassland field study to assess and compare the relative and temporal impact of bovine, swine and
poultry manure application on the grass phyllosphere and soil microbiome and resistome over a period of four months,
using 16S rRNA amplicon sequencing and high-throughput quantitative PCR (HT-qPCR). The soil and grass
phyllosphere contained a diverse range of antimicrobial resistance genes (ARGs) and mobile genetic elements
(MGEs). Manure treatment was found to introduce ARGs belonging to clinically important antimicrobial classes,
such as aminoglycoside and sulphonamide into grass and soil. Temporal analysis of ARGs and MGEs associated with
manure treatment indicated ARGs patterns were similar across the different manure types in the manure treated soil
and grass phyllosphere. Manure treatment resulted in the enrichment in members of the indigenous microbiota and
the introduction of manure associated bacteria, with this impact extending past the recommended six-week exclusion
period. However, these bacteria were in low relative abundance and manure treatment was not found to significantly
impact the overall composition of the microbiome or resistome. This provides evidence that the current guidelines facilitate reduction of biological risk to livestock. Additionally, in soil and grass samples MGEs correlated with ARGs
from clinically important antimicrobial classes, indicating the key role MGEs play in horizontal gene transfer in agri-cultural grassland. These results demonstrate the role of the grass phyllosphere as an under-studied sink of AMR.
Item Type: | Article |
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Keywords: | Antimicrobial resistance; High-throughput quantitative PCR; Microbiome; One Health; Agriculture; Environment; Grassland; |
Academic Unit: | Faculty of Science and Engineering > Biology Faculty of Science and Engineering > Research Institutes > Human Health Institute |
Item ID: | 19103 |
Identification Number: | 10.1016/j.scitotenv.2023.163926 |
Depositing User: | Fiona Walsh |
Date Deposited: | 24 Oct 2024 14:40 |
Journal or Publication Title: | Science of The Total Environment |
Publisher: | Elsevier |
Refereed: | Yes |
Related URLs: | |
URI: | https://mural.maynoothuniversity.ie/id/eprint/19103 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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