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Cotter, Gary, Wheedle, Roisin and Kavanagh, Kevin (1998) Monoclonal antibodies directed against extracellular matrix proteins reduce the adherence of Candida albicans to HEp-2 cells. Mycopathologia, 141 (3). pp. 137-142. ISSN 1573-0832

Cotton, James A. and McInerney, James O. (2010) Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function. Proceedings of the National Academy of Sciences , 107 (40). pp. 17252-17255. ISSN 1091-6490

Coughlan, A., Scanlon, K., Mahon, Bernard P. and Towler, M.R. (2010) Zinc and silver glass polyalkenoate cements: An evaluation of their antibacterial nature. Bio-Medical Materials and Engineering, 20 (2). pp. 99-106. ISSN 0959-2989

Coughlan, Catherine A., Chotirmall, Sanjay H., Renwick, Julie, Hassan, Tidi, Low, Teck Boon, Bergsson, Gudmundur, Eshwika, Ahmed, Bennett, Kathleen, Dunne, Katie, Greene, Catherine M., Gunaratnam, Cedric, Kavanagh, Kevin, Logan, Patrick M., Murphy, Philip, Reeves, Emer P. and McElvaney, Noel G. (2012) The Effect of Aspergillus fumigatus Infection on Vitamin D Receptor Expression in Cystic Fibrosis. American Journal of Respiratory and Critical Care Medicine, 186 (10). pp. 999-1007. ISSN 1535-4970

Coughlan, Gillian (2015) Studies on the novel detection and destruction of the enteroparasite Giardia lamblia and other veterinary problematic microorganisms examined under varying culture conditions. Masters thesis, National University of Ireland Maynooth.

Coughlan, Patricia, Carolan, James C., Hook, Ingrid, Kilmartin, Lisa and Hodkinson, Trevor (2020) Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions. Horticulturae, 6 (1). p. 19. ISSN 2311-7524

Coughlan, Patricia, Carolan, James C., Hook, Ingrid L.I., Kilmartin, Lisa and Hodkinson, Trevor R. (2020) Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions. Horticulturae, 6 (1). pp. 1-16. ISSN 2311-7524

Coyle, Barry, Kinsella, Paula, McCann, Malachy, Devereux, Michael, O'Connor, Robert, Clynes, Martin and Kavanagh, Kevin (2004) Induction of apoptosis in yeast and mammalian cells by exposure to 1,10-phenanthroline metal complexes. Toxicology in Vitro, 18 (1). pp. 63-70.

Coyle, Adrian T., Miggin, Sinead and Kinsella, B. Therese (2002) Characterization of the 5' untranslated region of α and β isoforms of the human thromboxane A² receptor (TP). Differential promoter utilization by the TP isoforms. European Journal of Biochemistry, 269. pp. 4058-4073. ISSN 0014-2956

Coyle, Barry, Kavanagh, Kevin, McCann, Malachy, Devereux, Michael and Geraghty, Majella (2003) Mode of anti-fungal activity of 1,10-phenanthroline and its Cu(II), Mn(II) and Ag(I) complexes. Biometals, 16. pp. 321-329. ISSN 0966-0844

Craig, W., Gargano, Daniela, Scotti, Nunzia, Nguyen, T.T., Lao, N.T., Kavanagh, T.A., Dix, Philip and Cardi, T. (2005) Direct gene transfer in potato: A comparison of particle bombardment of leaf explants and PEG-mediated transformation of protoplasts. Plant Cell Reports, 10. pp. 603-611. ISSN 0721-7714

Craig, Wendy, Lenzi, Paolo, Scotti, Nunzia, De Palma, Monica, Saggese, Paola, Carbone, Virginia, McGrath Curran, Noreen, Magee, Alan M., Medgyesy, Peter, Kavanagh, Tony A., Dix, Philip, Grillo, Stefania and Cardi, Teodoro (2008) Transplastomic tobacco plants expressing a fatty acid desaturase gene exhibit altered fatty acid profiles and improved cold tolerance. Transgenic Research, 17 (5). pp. 769-782. ISSN 0962-8819

Crawford, Dana C, Huffman, Jennifer E., Albrecht, Eva, Teumer, Alexander, Mangino, Massimo, Kapur, Karen, Johnson, Toby, Kutalik, Zoltán, Pirastu, Nicola, Pistis, Giorgio, Lopez, Lorna M., Haller, Toomas, Salo, Perttu, Goel, Anuj, Li, Man, Tanaka, Toshiko, Dehghan, Abbas, Ruggiero, Daniela, Malerba, Giovanni, Smith, Albert V., Nolte, Ilja M., Portas, Laura, Phipps-Green, Amanda, Boteva, Lora, Navarro, Pau, Johansson, Asa, Hicks, Andrew A., Polasek, Ozren, Esko, Tõnu, Peden, John F., Harris, Sarah E., Murgia, Federico, Wild, Sarah H., Tenesa, Albert, Tin, Adrienne, Mihailov, Evelin, Grotevendt, Anne, Gislason, Gauti K., Coresh, Josef, D'Adamo, Pio, Ulivi, Sheila, Vollenweider, Peter, Waeber, Gerard, Campbell, Susan, Kolcic, Ivana, Fisher, Krista, Viigimaa, Margus, Metter, Jeffrey E., Masciullo, Corrado, Trabetti, Elisabetta, Bombieri, Cristina, Sorice, Rossella, Döring, Angela, Reischl, Eva, Strauch, Konstantin, Hofman, Albert, Uitterlinden, Andre G., Waldenberger, Melanie, Wichmann, H-Erich, Davies, Gail, Gow, Alan J., Dalbeth, Nicola, Stamp, Lisa, Smit, Johannes H., Kirin, Mirna, Nagaraja, Ramaiah, Nauck, Matthias, Schurmann, Claudia, Budde, Kathrin, Farrington, Susan M., Theodoratou, Evropi, Jula, Antti, Salomaa, Veikko, Sala, Cinzia, Hengstenberg, Christian, Burnier, Michel, Mägi, Reedik, Klopp, Norman, Kloiber, Stefan, Schipf, Sabine, Ripatti, Samuli, Cabras, Stefano, Soranzo, Nicole, Homuth, Georg, Nutile, Teresa, Munroe, Patricia B., Hastie, Nicholas, Campbell, Harry, Rudan, Igor, Cabrera, Claudia, Haley, Chris, Franco, Oscar H., Merriman, Tony R., Gudnason, Vilmundur, Pirastu, Mario, Penninx, Brenda W., Snieder, Harold, Metspalu, Andres, Ciullo, Marina, Pramstaller, Peter P., van Duijn, Cornelia M., Ferrucci, Luigi, Gambaro, Giovanni, Deary, Ian J., Dunlop, Malcolm G., Wilson, James F., Gasparini, Paolo, Gyllensten, Ulf, Spector, Tim D., Wright, Alan F., Hayward, Caroline, Watkins, Hugh, Perola, Markus, Bochud, Murielle, Kao, W. H. Linda, Caulfield, Mark, Toniolo, Daniela, Völzke, Henry, Gieger, Christian, Köttgen, Anna and Vitart, Veronique (2015) Modulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans. PLoS ONE, 10 (3). e0119752. ISSN 1932-6203

Creaven, Bernadette, Egan, Denise, Kavanagh, Kevin, McCann, Malachy, Noble, Andy, Thati, Bhumika and Walsh, Maureen (2006) Synthesis, characterization and antimicrobial activity of a series of substituted coumarin-3-carboxylatosilver(1) complexes. Inorganica Chimica Acta, 359 (12). pp. 3976-3984.

Creaven, Bernadette S., Duff, Brian, Egan, Denise A., Kavanagh, Kevin, Rosair, Georgina, Reddy Thangellaa, Venkat and Walsh, Maureen (2010) Anticancer and antifungal activity of copper(II) complexes of quinolin-2(1H)-one-derived Schiff bases. Inorganica Chimica Acta, 363 (14). pp. 4048-4058. ISSN 0020-1693

Creaven, Bernadette S., Egan, Denise A., Karcz, Dariusz, Kavanagh, Kevin, McCann, Malachy, Mahon, Mary, Noble, Andy, Thati, Bhumika and Walsh, Maureen (2007) Synthesis, characterisation and antimicrobial activity of copper(II) and manganese(II) complexes of coumarin-6,7-dioxyacetic acid (cdoaH2) and 4-methylcoumarin-6,7-dioxyacetic acid (4-MecdoaH2): X-ray crystal structures of [Cu(cdoa)(phen)2] · 8.8H2O and [Cu(4-Mecdoa)(phen)2] · 13H2O (phen = 1,10-phenanthroline). Journal of Inorganic Biochemistry, 101 (8). pp. 1108-1119. ISSN 0162-0134

Creaven, Bernadette S., Egan, Denise A., Kavanagh, Kevin, McCann, Malachy, Mahon, Mary, Noble, Andy, Thati, Bhumika and Walsh, Maureen (2005) Synthesis and antimicrobial activity of copper(II) and silver(I) complexes of hydroxynitrocoumarins: X-ray crystal structures of [Cu(hnc)2(H2O)2] Æ 2H2O and [Ag(hnc)] (hncH = 4-hydroxy-3-nitro-2H-chromen-2-one). Polyhedron, 24 (8). pp. 949-957. ISSN 0277-5387

Creevey, C.J. and McInerney, J.O. (2005) Clann: investigating phylogenetic information through supertree analyses. Bioinformatics, 21 (3). pp. 390-392.

Creevey, Christopher J., Doerks, Tobias, Fitzpatrick, David A., Raes, Jeroen and Bork, Peer (2011) Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer. PLoS ONE, 6 (8). ISSN 1932-6203

Creevey, Christopher J., Fitzpatrick, David A., Philip, Gayle K., Kinsella, Rhoda J., O'Connell, Mary J., Pentony, Melissa M., Travers, Simon A., Wilkinson, Mark and McInerney, James O. (2004) Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proceedings of The Royal Society of London, Biology Series, 271 (1557). pp. 2551-2558.

Cullen, Louise, O'Connor, Andrew, McCormack, Sarah, Owens, Rebecca A., Holt, Giles S., Collins, Cassandra, Callaghan, Maire, Doyle, Sean, Smith, Darren, Schaffer, Kirsten, Fitzpatrick, David A. and McClean, Siobhan (2018) The involvement of the low-oxygen-activated locus of Burkholderia cenocepacia in adaptation during cystic fibrosis infection. Scientific Reports, 8 (1). p. 13386. ISSN 2045-2322

Cullen, Merissa, Thompson, Linzi J., Carolan, James C., Stout, Jane C. and Stanley, Dara A. (2019) Fungicides, herbicides and bees: A systematic review of existing research and methods. PLoS ONE, 14 (12). e0225743. ISSN 1932-6203

Cullen, Merissa G., Bliss, Liam, Stanley, Dara A. and Carolan, James C. (2023) Investigating the effects of glyphosate on the bumblebee proteome and microbiota. Science of The Total Environment, 864 (161074). pp. 1-16. ISSN 0048-9697

Cullen, Merissa George (2023) Investigating the effects of non-insecticide pesticides widely used in Irish agriculture on the bumblebee Bombus terrestris (L. 1758). PhD thesis, National University of Ireland Maynooth.

Culleton, Bridget A., Lall, Patrick, Kinsella, Gemma K., Doyle, Sean, McCaffrey, John G., Fitzpatrick, David A. and Burnell, Ann (2014) A role for the Parkinson’s disease protein DJ-1 as a chaperone and antioxidant in the anhydrobiotic nematode Panagrolaimus superbus. Cell Stress & Chaperones, 20 (1). pp. 121-137. ISSN 1355-8145

Culligan, Kevin, Banville, Niamh, Dowling, Paul and Ohlendieck, Kay (2002) Drastic reduction of calsequestrin-like proteins and impaired calcium binding in dystrophic mdx muscle. Journal of applied physiology, 92 (2). pp. 435-445. ISSN 8750-7587

Culligan, Kevin, Glover, Louise, Dowling, Paul and Ohlendieck, Kay (2001) Brain dystrophin-glycoprotein complex: persistent expression of beta-dystroglycan, impaired oligomerization of Dp71 and up-regulation of utrophins in animal models of muscular dystrophy. BMC Cell Biology, 2 (2). ISSN 1471-2121

Cumiskey, D., Butler, Marion P., Moynagh, Paul N. and O'Connor, J.J. (2007) Evidence for a role for the group I metabotropic glutamate receptor in the inhibitory effect of tumor necrosis factor-α on long-term potentiation. Brain Research, 1136. pp. 13-19. ISSN 0006-8993

Cummings, Michael P., Nugent, Jacqueline M., Olmstead, Richard G. and Palmer, Jeffrey D. (2003) Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms. Current Genetics, 43 (2). pp. 131-138. ISSN 0172-8083

Cummins, Carla A. (2011) A new method for identifying site-specific evolutionary rates and its applications. PhD thesis, National University of Ireland Maynooth.

Cummins, E.P., Berra, E., Comerford, K.M., Ginouves, A., Fitzgerald, K.T., Seeballuck, F., Godson, C., Nielsen, J.E., Moynagh, Paul N., Pouyssegur, J. and Taylor, C.T. (2006) Prolyl hydroxylase-1 negatively regulates IκB kinase-β, giving insight into hypoxia-induced NFκB activity. Proceedings of the National Academy of Sciences, 103 (48). pp. 18154-18159. ISSN 1091-6490

Curran, Niamh, Griffin, Bryan D., O'Toole, Daniel, Brady, Kevin J., Fitzgerald, Stephen and Moynagh, Paul N. (2005) The Synthetic Cannabinoid R(+)WIN 55,212-2 Inhibits the Interleukin-1 Signaling Pathway in Human Astrocytes in a Cannabinoid Receptor-independent Manner. Journal of Biological Chemistry, 28 (43). pp. 35797-35806. ISSN 0021-9258

Curran, Robert, Lenehan, Joanne, McCann, Malachy, Kavanagh, Kevin, Devereux, Michael, Egan, Denise A., Clifford, Grace, Keane, Kevin, Creaven, Bernadette S. and McKee, Vickie (2007) [Ag2(aca)2]n and [Ag4(aca)4(NH3)2] (acaH = 9-anthracenecarboxylic acid): Synthesis, X-ray crystal structures, antimicrobial and anti-cancer activities. Inorganic Chemistry Communications, 10 (10). pp. 1149-1153. ISSN 1387-7003

Curtis, Aaron, Walshe, Kieran and Kavanagh, Kevin (2023) Prolonged Subculturing of Aspergillus fumigatus on Galleria Extract Agar Results in Altered Virulence and Sensitivity to Antifungal Agents. Cells, 12 (7). p. 1065. ISSN 2073-4409

Cusack, Sarah (2010) Assessing the role of Hsp70 in prion propagation in Saccharomyces cerevisiae. PhD thesis, National University of Ireland Maynooth.

Cuskelly, Daragh (2016) Developing Budding Yeast as a Cell Factory for Production of the Antioxidant Ergothioneine. Masters thesis, National University of Ireland Maynooth.

D

D'Arcy, Kenneth, Doyle, Adam Patrick, Kavanagh, Kevin, Ronconi, Luca, Fresch, Barbara and Montagner, Diego (2019) Stability of antibacterial Te(IV) compounds: A combined experimental and computational study. Journal of Inorganic Biochemistry, 198 (110719). ISSN 0162-0134

Dalton, John P., O'Neill, Sandra M., Stack, Colin M., Collins, Peter R., Walshe, Alan, Sekiya, Mary, Doyle, Sean, Mulcahy, Grace, Hoyle, Deborah, Khaznadji, Eric, Moire, Nathalie, Brennan, Gerard, Mousley, Angela, Kreshchenko, Natalia, Maule, Aaron G. and Donnelly, Sheila M. (2003) Fasciola hepatica cathepsin L-like proteases: biology, function, and potential in the development of first generation liver fluke vaccines. International Journal for Parasitology, 33 (11). pp. 1173-1181. ISSN 0020-7519

Daly, P. and Kavanagh, Kevin (2002) Immobilization of Aspergillus fumigatus colonies in a soft agar matrix allows visualization of A549 cell detachment and death. Medical Mycology, 40 (1). pp. 27-33. ISSN 1232-986X

Daly, Paul, Chen, Siqiao, Xue, Taiqiang, Li, Jingjing, Sheikh, Taha Majid Mahmood, Zhang, Qimeng, Wang, Xuehai, Zhang, Jinfeng, Fitzpatrick, David A., McGowan, Jamie, Shi, Xiujuan, Deng, Sheng, Jiu, Min, Zhou, Dongmei, Druzhinina, Irina S. and Wei, Lihui (2021) Dual-Transcriptomic, Microscopic, and Biocontrol Analyses of the Interaction Between the Bioeffector Pythium oligandrum and the Pythium Soft-Rot of Ginger Pathogen Pythium myriotylum. Frontiers in Microbiology, 12 (765872). pp. 1-14. ISSN 1664-302X

Daly, Paul and Kavanagh, Kevin (2001) Pulmonary aspergillosis: Clinical presentation, diagnosis and therapy. British journal of biomedical science, 58 (3). pp. 197-205. ISSN 0967-4845

Daly, Paul, Verhaegen, Steven, Clynes, Martin and Kavanagh, Kevin (1999) Culture filtrates of Aspergillus fumigatus induce different modes of cell death in human cancer cell lines. Mycopathologia, 146 (2). pp. 67-74. ISSN 0301-486X

Daly, Paul, Zhou, Dongmei, Shen, Danyu, Chen, Yifan, Xue, Taiqiang, Chen, Siqiao, Zhang, Qimeng, Zhang, Jinfeng, McGowan, Jamie, Cai, Feng, Pang, Guan, Wang, Nan, Sheikh, Taha Majid Mahmood, Deng, Sheng, Li, Jingjing, Soykam, Hüseyin Okan, Kara, Irem, Fitzpatrick, David A., Druzhinina, Irina S., Bayram Akcapinar, Günseli, Wei, Lihui, Burbank, Lindsey Price and Matson, Michael (2022) Genome of Pythium myriotylum Uncovers an Extensive Arsenal of Virulence-Related Genes among the Broad-Host-Range Necrotrophic Pythium Plant Pathogens. Microbiology Spectrum, 10 (4). ISSN 2165-0497

Dang, Xiaodong (2012) Application of High Resolution Melting analysis for haplotype detection in phylogeographic research and case studies of Arenaria ciliata, A. norvegica and Minuartia recurva (Caryophyllaceae). PhD thesis, National University of Ireland Maynooth.

Davidson, Ian C., Cott, Grace M., Devaney, John L. and Simkanin, Christina (2018) Differential effects of biological invasions on coastal blue carbon: A global review and meta‐analysis. Global Change Biology, 24 (11). pp. 5218-5230. ISSN 1354-1013

Davies, G, Harris, S E, Reynolds, C A, Payton, A, Knight, H M, Liewald, D C, Lopez, Lorna M., Luciano, M, Gow, A J, Corley, J, Henderson, R, Murray, C, Pattie, A, Fox, H C, Redmond, P, Lutz, M W, Chiba-Falek, O, Linnertz, C, Saith, S, Haggarty, P, McNeill, G, Ke, X, Ollier, W, Horan, M, Roses, A D, Ponting, C P, Porteous, D J, Tenesa, A, Pickles, A, Starr, J M, Whalley, L J, Pedersen, N L, Pendleton, N, Visscher, P M and Deary, I J (2014) A genome-wide association study implicates the APOE locus in nonpathological cognitive ageing. Molecular Psychiatry, 19 (1). pp. 76-87. ISSN 1359-4184

Davis, Carol (2011) The Glutathione S-Transferase GliG Mediates Gliotoxin Biosynthesis, not Self-Protection, in Aspergillus fumigatus: A Functional Genomic Investigation. PhD thesis, National University of Ireland Maynooth.

Davis, Carol, Carberry, Stephen, Schrettl, Markus, Singh, Ishwar , Stephens, John C., Barry, Sarah M., Kavanagh, Kevin, Challis, Gregory L., Brougham, Dermot and Doyle, Sean (2011) The Role of Glutathione S-Transferase GliG in Gliotoxin Biosynthesis in Aspergillus fumigatus. Chemistry and Biology, 18. pp. 542-552. ISSN 1074-5521

Davis, Carol, Gordon, Natasha, Murphy, Sinead, Singh, Ishwar , Kavanagh, Kevin, Carberry, Stephen and Doyle, Sean (2011) Single-pot derivatisation strategy for enhanced gliotoxin detection by HPLC and MALDI-ToF mass spectrometry. Analytical and Bioanalytical Chemistry, 401 (8). pp. 2519-2529. ISSN 1618-2642

De Marco Verissimo, Carolina, López Corrales, Jesús, Dorey, Amber L., Cwiklinski, Krystyna, Lalor, Richard, Calvani, Nichola Eliza Davies, Jewhurst, Heather L., Flaus, Andrew, Doyle, Sean and Dalton, John P. (2022) Production of a functionally active recombinant SARS-CoV-2 (COVID-19) 3C-like protease and a soluble inactive 3C-like protease-RBD chimeric in a prokaryotic expression system. Epidemiology and Infection, 150. ISSN 0950-2688

De Marco Verissimo, Carolina, O'Brien, Carol, López Corrales, Jesús, Dorey, Amber, Cwiklinski, Krystyna, Lalor, Richard, Doyle, Jack M., Field, Stephen, Masterson, Claire, Ribes Martinez, Eduardo, Hughes, Gerry, Bergin, Colm, Walshe, Kieran, McNicholas, Bairbre, Laffey, John G., Dalton, John P., Kerr, Colm and Doyle, Sean (2021) Improved diagnosis of SARS-CoV-2 by using nucleoprotein and spike protein fragment 2 in quantitative dual ELISA tests. Epidemiology and Infection, 149 (e140). pp. 1-11. ISSN 0950-2688

Deane, C.R., Fuller, M.P. and Dix, Philip (1995) Selection of hydroxyproline-resistant proline-accumulating mutants of cauliflower. C.R. Deane, M .P. Fuller' & P.J. Dix. Euphytica, 85. pp. 329-334.

Deane, C.R., Fuller, M.P. and Dix, Philip (1994) In vitro strategies for improvement of frost tolerance in cauliflower. Irish Journal of Agricultural and Food Research, 33. pp. 105-106. ISSN 07916833

Deegan, Orla, Walshe, Kieran, Kavanagh, Kevin and Doyle, Sean (2003) Quantitative detection of C-reactive protein using phosphocholine-labelled enzyme or microspheres. Analytical Biochemistry, 312 (2). pp. 175-181. ISSN 0003-2697

Delaney, Sarah (2019) Effects of dietary components on antibiotic resistance using mechanistic and plasmid based studies. PhD thesis, National University of Ireland Maynooth.

Delaney, Sarah, Do, Thi Thuy, Corrigan, Aoife, Murphy, Richard and Walsh, Fiona (2021) Investigation into the effect of mannan-rich fraction supplementation on the metagenome of broiler chickens. Microbial Genomics, 7 (7). pp. 1-12. ISSN 2057-5858

Delaney, Sarah, Murphy, Richard and Walsh, Fiona (2018) A Comparison of Methods for the Extraction of Plasmids Capable of Conferring Antibiotic Resistance in a Human Pathogen From Complex Broiler Cecal Samples. Frontiers in Microbiology, 9 (1731). ISSN 1664-302X

Delgado, Josué, Núñez, Felix, Asensio, Miguel A. and Owens, Rebecca A. (2019) Quantitative proteomic profiling of ochratoxin A repression in Penicillium nordicum by protective cultures. International Journal of Food Microbiology, 305. ISSN 0168-1605

Delgado, Josué, Owens, Rebecca A., Asensio, Miguel A. and Núñez, Felix (2015) Impact of the antifungal protein PgAFP from Penicillium chrysogenum on the protein profile in Aspergillus flavus. Applied Microbiology and Biotechnology, 99 (20). pp. 8701-8715. ISSN 1432-0614

Delgado, Josué, Owens, Rebecca A., Doyle, Sean, Asensio, Miguel A. and Núñez, Felix (2016) Increased chitin biosynthesis contributes to the resistance of Penicillium polonicum against the antifungal protein PgAFP. Applied Microbiology and Biotechnology, 100 (1). pp. 371-383. ISSN 1432-0614

Delgado, Josué, Owens, Rebecca A., Doyle, Sean, Asensio, Miguel A. and Núñez, Felix (2016) Manuscript title: antifungal proteins from moulds: analytical tools and potential application to dry-ripened foods. Applied Microbiology and Biotechnology, 100 (16). pp. 6991-7000.

Delgado, Josué, Owens, Rebecca A., Doyle, Sean, Núñez, Felix and Asensio, Miguel A. (2017) Quantitative proteomics reveals new insights into calcium-mediated resistance mechanisms in Aspergillus flavus against the antifungal protein PgAFP in cheese. Food Microbiology, 66. pp. 1-10. ISSN 1095-9998

Delobel, Arnaud, Graciet, Emmanuelle, Andreescu, Simona, Gontero, Brigitte, Halgand, Frederic and Laprevote, Olivier (2005) Mass spectrometric analysis of the interactions between CP12, a chloroplast protein, and metal ions: a possible regulatory role within a PRK/GAPDH/CP12 complex. Rapid Communications in Mass Spectrometry, 19 (22). pp. 3379-3388. ISSN 1097-0231

Dempsey, Catherine M. and Griffin, Christine (2002) Phased activity in Heterorhabditis megidis infective juveniles. Parasitology, 124. pp. 605-613. ISSN 0031-1820

Dempsey, Catherine M. and Griffin, Christine (2003) The infectivity and behaviour of exsheathed and ensheathed Heterorhabditis megidis infective juveniles. Nematology, 5 (1). pp. 49-53. ISSN 1388-5545

Deslyper, Gwendoline, Colgan, Thomas J., Cooper, Andrew J.R., Holland, Celia V. and Carolan, James C. (2016) A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model. PLoS Neglected Tropical Diseases, 10 (8). ISSN 1935-2727

Deslyper, Gwendoline, Doherty, Derek G., Carolan, James C. and Holland, Celia V. (2019) The role of the liver in the migration of parasites of global significance. Parasites & Vectors, 12 (531). ISSN 1756-3305

Deslyper, Gwendoline, Holland, Celia V., Colgan, Thomas J. and Carolan, James C. (2019) The liver proteome in a mouse model for Ascaris suum resistance and susceptibility: evidence for an altered innate immune response. Parasites & Vectors, 12 (402). ISSN 1756-3305

Devaney, John L., Jansen, Marcel A.K. and Whelan, Pádraig M. (2014) Spatial patterns of natural regeneration in stands of English yew (Taxus baccata L.); Negative neighbourhood effects. Forest Ecology and Management, 321. pp. 52-60. ISSN 03781127

Devaney, John L., Lehmann, Michael, Feller, Ilka C. and Parker, John D. (2017) Mangrove microclimates alter seedling dynamics at the range edge. Ecology, 98 (10). pp. 2513-2520. ISSN 0012-9658

Devaney, John L., Marone, Diatta and McElwain, Jennifer C. (2021) Impact of soil salinity on mangrove restoration in a semiarid region: a case study from the Saloum Delta, Senegal. Restoration Ecology, 29 (2). ISSN 1061-2971

Devaney, John L., Pullen, Jamie, Cook‐Patton, Susan C., Burghardt, Karin T. and Parker, John D. (2020) Tree diversity promotes growth of late successional species despite increasing deer damage in a restored forest. Ecology, 101 (8). ISSN 0012-9658

Devaney, John L., Pullen, Jamie, Feller, Ilka C. and Parker, John D. (2021) Low humidity and hypersalinity reduce cold tolerance in mangroves. Estuarine, Coastal and Shelf Science, 248. p. 107015. ISSN 02727714

Devaney, John L., Redmond, John J, Cott, Grace M and O'Halloran, John (2016) Deforestation in Ireland 2000 – 2012. Irish Forestry, 73. pp. 8-24.

Devaney, John L., Redmond, John J. and O'Halloran, John (2015) Contemporary forest loss in Ireland; quantifying rare deforestation events in a fragmented forest landscape. Applied Geography, 63. pp. 346-356. ISSN 01436228

Devaney, John L., Whelan, Pádraig M. and Jansen, Marcel A. K. (2018) Conspecific negative density dependence in a long-lived conifer, yew Taxus baccata L. European Journal of Forest Research, 137 (1). pp. 69-78. ISSN 1612-4669

Devaney, John L., Whelan, Pádraig M. and Jansen, Marcel A. K. (2015) Light responses of yew (Taxus baccata L.); does size matter? Trees, 29 (1). pp. 109-118. ISSN 0931-1890

Devereux, Michael, McCann, Malachy, O'Shea, Denis, Kelly, Rachel, Egan, Denise, Deegan, Carol, Kavanagh, Kevin, McKee, Vickie and Finn, Gregory J. (2004) Synthesis, antimicrobial activity and chemotherapeutic potential of inorganic derivatives of 2-(4’-thiazolyl)benzimazole {thiabendazole}: X-ray crystal structures of [Cu(TBZH)2Cl]Cl.H2O.EtOH and TBZH2NO3 (TBZH = thiabendazole). Journal of Inorganic Biochemistry, 98 (6). pp. 1023-1031. ISSN 0162-0134

Dib, Karim, El Banna, Amal, Radulescu, Clara, Lopez Campos, Guillermo, Sheehan, Gerard and Kavanagh, Kevin (2022) Histamine Produced by Gram-Negative Bacteria Impairs Neutrophil’s Antimicrobial Response by Engaging the Histamine 2 Receptor. Journal of Innate Immunity, 15 (1). pp. 153-173. ISSN 1662-811X

Diekmann, Kerstin, Hodkinson, Trevor R., Wolfe, Kenneth H., van den Bekerom, Rob Jozef Matheus, Dix, Philip and Barth, Susanne (2009) Complete Chloroplast Genome Sequence of a Major Allogamous Forage Species, Perennial Ryegrass (Lolium perenne L.). DNA Research, 16. pp. 165-176. ISSN 1340-2838

Dillon, Aoife and Griffin, Christine (2008) Controlling the large pine weevil, Hylobius abietis, using natural enemies. COFORD Connects: Silviculture and Forest Management (15). pp. 1-8.

Dillon, Aoife B., Foster, Aileen, Williams, Christopher D. and Griffin, Christine (2012) Environmental safety of entomopathogenic nematodes – Effects on abundance, diversity and community structure of non-target beetles in a forest ecosystem. Biological Control, 63 (2). pp. 107-114. ISSN 1049-9644

Dillon, Aoife B., Ward, Declan, Downes, Martin and Griffin, Christine (2006) Suppression of the large pine weevil Hylobius abietis (L.) (Coleoptera: Curculionidae) in pine stumps by entomopathogenic nematodes with different foraging strategies. Biological Control, 38. pp. 217-226.

Dillon, A.B., Rolston, A.N., Meade, Conor, Downes, Martin and Griffin, Christine (2008) Establishment, persistence, and introgression of entomopathogenic nematodes in a forest ecosystem. Ecological Applications, 18 (3). pp. 735-747. ISSN 1051-0761

Dillon, Aoife B., Downes, Martin, Ward, Declan and Griffin, Christine (2007) Optimizing application of entomopathogenic nematodes to manage large pine weevil, Hylobius abietis L. (Coleoptera:Curculionidae) populations developing in pine stumps, Pinus sylvestris. Biological Control, 40 (2). pp. 253-263. ISSN 1049-9644

Dillon, Aoife B., Moore, Colm P., Downes, Martin and Griffin, Christine (2008) Evict or infect? Managing populations of the large pine weevil, Hylobius abietis, using a bottom–up and top–down approach. Forest Ecology and Management, 255 (7). pp. 2634-2642. ISSN 0378-1127

Ding, Chen, Yin, Jun, Tovar, Edgar Mauricio Medina, Fitzpatrick, David A., Higgins, Desmond G. and Thiele, Dennis J. (2011) The Cu regulon of the human fungal pathogen Cryptococcus neoformans H99: Cuf1 activates distinct genes in response to both Cu excess and deficiency. Molecular Microbiology, 81 (6). pp. 1560-1576. ISSN 0950-382X

Dissmeyer, Nico, Graciet, Emmanuelle, Holdsworth, Michael J. and Gibbs, Daniel J. (2017) N-term 2017: Proteostasis via the N-terminus. Trends in Biochemical Sciences, 44 (4). pp. 293-295. ISSN 0167-7640

Dissmeyer, Nico, Rivas, Susana and Graciet, Emmanuelle (2018) Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway. New Phytologist, 218 (3). pp. 929-935. ISSN 0028-646X

Dix, I., Burnell, Ann, Griffin, Christine, Joyce, S.A. and Nugent, M.J. (1992) The identification of biological species in the genus Heterorhabditis (Nematoda : Heterorhabditidae) by cross-breeding second-generation amphimictic adults. Parasitology, 104. pp. 509-518.

Dix, Philip, Burbridge, Emma, Diamond, M. and McCabe, P.F. (2006) Use of cell morphology to evaluate the effect of a peroxidase gene on cell death induction thresholds in tobacco. Plant Science, 171. pp. 138-146.

Dix, Philip (1979) Cell Culture Manipulations as a potential breeding tool. In: Low Temperature Stress in Crop Plants. Academic Press, pp. 463-472. ISBN 0-12-460560-5

Dix, Philip (1981) Cross-resistance in Cell Lines of Nicotians sylvestris Selected for Resistance to Individual Antibiotics. Annals of Botany, 48 (2). pp. 321-325.

Dix, Philip (1981) Inheritance of Chloramphenicol Resistance, a Trait Selected in Cell Cultures of Nicotiana sylvestris. Speg. and Comes. Annals of Botany, 48 (2). pp. 315-319.

Dix, Philip and Street, H.E. (1976) Selection of Plant Cell Lines with Enhanced Chilling Resistance. Annals of Botany, 40 (5). pp. 903-910.

Dix, Philip (1993) Plant Tissue Culture Manual - Use of Chemical and Physical Mutagens In vitro. Manual. Kluwer Academic Publishers.

Dix, Philip, Joo, Ferenc and Maliga, Pal (1977) A cell line of Nicotiana sylvestris with resistance to kanamycin and streptomycin. Molecular and General Genetics MGG, 157. pp. 285-290. ISSN 0026-8925

Dix, Philip, Lao, Nga Thi and Kavanagh, Tony (1994) Controlling insect pests with bacterial genes. The Irish Scientist, 1. p. 28.

Dix, Philip (1977) Chilling Resistance is not Transmitted Sexually in Plants Regenerated from Nicotiana sylvestris Cell Lines. Zeitschrift für Pflanzenphysiologie, 84 (3). pp. 223-226. ISSN 0044-328X

Dix, Philip (1980) Environmental stress resistance: Selection in plant cell cultures. In: Plant Cell Cultures: Results and Perspectives. Developments in Plant Biology, 5 . Elsevier, Holland, pp. 83-86. ISBN 0-444-80081-6

Dix, Philip (1993) The role of mutant cell lines in studies on environmental stress tolerance: an assessment. The Plant Journal, 3 (2). pp. 309-313. ISSN 0960-7412

Dix, Philip, McLysaght, Una A. and Pearce, Roger S. (1984) The potential of cell cultures for the production of salt tolerant cultivars. In: Efficiency in Plant Breeding. Pudoc Wageningen, pp. 219-223.

Dix, Philip and Pearce, R.S. (1981) Proline Accumulation in NaCI-resistant and Sensitive Cell Lines of Nicotiana sylvestris. Zeitschrift für Pflanzenphysiologie, 102 (3). pp. 243-248. ISSN 0044-328X

Dix, Philip and Street, H.E. (1974) Effects of p-Flourophenylalanine(PFP)on the Growth of Cell Lines Differing in Ploidy and Derived from Nicotiana Sylvestris. Plant Science Letters, 3. pp. 283-288. ISSN 0304-4211

Do, Thi Thuy, Nolan, Stephen, Hayes, Nicky, O'Flaherty, Vincent, Burgess, Catherine, Brennan, Fiona and Walsh, Fiona (2022) Metagenomic and HT-qPCR analysis reveal the microbiome and resistome in pig slurry under storage, composting, and anaerobic digestion. Environmental Pollution, 305 (119271). pp. 1-11. ISSN 02697491

Do, Thi Thuy, Smyth, Cian, Crispie, Fiona, Burgess, Catherine, Brennan, Fiona and Walsh, Fiona (2023) Comparison of soil and grass microbiomes and resistomes reveals grass as a greater antimicrobial resistance reservoir than soil. Science of The Total Environment, 857. p. 159179. ISSN 0048-9697

Do, Thi Thuy, Tamames, Javier, Stedtfeld, Robert D., Guo, Xueping, Murphy, Sinead, Tiedje, James M. and Walsh, Fiona (2018) Antibiotic Resistance Gene Detection in the Microbiome Context. Microbial Drug Resistance, 24 (5). pp. 542-546. ISSN 1076-6294

Doherty, Aoife (2012) Increased genome sampling reveals novel insights into vertebrate molecular evolution. PhD thesis, National University of Ireland Maynooth.

Doherty, Derek G., Arnaiz, Blanca, Madrigal-Estebas, Laura, Todryk, Stephen, James, Tharappel C. and Bond, Ursula (2006) A novel method to identify and characterise peptide mimotopes of heat shock protein 70-associated antigens. Journal of Immune Based Therapies and Vaccines, 4 (2). pp. 1-12.

Dolan, K.M., Jones, J.T. and Burnell, Ann (2002) Detection of changes occurring during recovery from the dauer stage in Heterorhabditis bacteriophora. Parasitology, 125. pp. 71-81.

Dolan, Niamh, Gavin, Declan P., Eshwika, Ahmed, Kavanagh, Kevin, McGinley, John and Stephens, John C. (2016) Synthesis, antibacterial and anti-MRSA activity, in vivo toxicity and a structure-activity relationship study of a quinoline thiourea. Bioorganic and Medicinal Chemistry Letters, 26 (2). pp. 630-635. ISSN 0960-894X

Dolan, Niamh, McGinley, John, Stephens, John C., Kavanagh, Kevin, Hurley, Daniel and Maher, Niall (2014) Synthesis, characterisation and antimicrobial studies of organotin(IV) complexes with 1,10-phenanthroline derivatives. Inorganica Chimica Acta, 409 (Part B). pp. 276-284. ISSN 0020-1693

Dolan, Stephen (2015) Regulatory and self-protection implications of gliotoxin bisthiomethylation in Aspergillus fumigatus. PhD thesis, National University of Ireland Maynooth.

Dolan, Stephen K., Bock, Tobias, Hering, Vanessa, Owens, Rebecca A., Jones, Gary W., Blankenfeldt, Wulf and Doyle, Sean (2017) Structural, mechanistic and functional insight into gliotoxin bis-thiomethylation in Aspergillus fumigatus. Open Biology, 7 (2). ISSN 2046-2441

Dolan, Stephen K., O'Keefe, Grainne, Jones, Gary W. and Doyle, Sean (2015) Resistance is not futile: gliotoxin biosynthesis, functionality and utility. Trends in Microbiology, 23 (7). pp. 419-428. ISSN 0966-842X

Dolan, Stephen K., Owens, Rebecca A., O'Keefe, Grainne, Hammel, Stephen, Fitzpatrick, David A., Jones, Gary W. and Doyle, Sean (2014) Regulation of Nonribosomal Peptide Synthesis: bis-Thiomethylation Attenuates Gliotoxin Biosynthesis in Aspergillus fumigatus. Chemistry and Biology, 21 (8). pp. 999-2012. ISSN 1074-5521

Dombrowski, Yvonne, O'Hagan, Thomas, Dittmer, Marie, Penalva, Rosana, Mayora, Sonia R., Bankhead, Peter, Fleville, Samara, Eleftheriadis, George, Zhao, Chao, Naughton, Michelle, Hassan, Rachel, Moffatt, Jill, Falconer, John, Boyd, Amanda, Hamilton, Peter, Allen, Ingrid V., Kissenpfennig, Adrien, Moynagh, Paul N., Evergreen, Emma, Perbal, Bernard, Willaims, Anna C., Ingram, Rebecca J., Chan, Jonah R., Franklin, Robin J.M. and Fitzgerald, Denise C. (2017) Regulatory T cells promote myelin regeneration in the Central Nervous System. Nature Neuroscience, 20. pp. 674-680. ISSN 1546-1726

Donoghue, Pamela, Doran, Philip, Dowling, Paul and Ohlendieck, Kay (2005) Differential expression of the fast skeletal muscle proteome following chronic low-frequency stimulation. Biochimica et Biophysica Acta - Proteins and Proteomics, 1752 (2). pp. 166-176. ISSN 1570-9639

Donoghue, Pamela, Doran, Philip, Wynne, Kieran, Federsen, Kasper, Dunn, Michael J. and Ohlendieck, Kay (2007) Proteomic profiling of chronic low-frequency stimulated fast muscle. Proteomics, 7 (18). pp. 3417-3430. ISSN 1615-9853

Donoghue, Pamela, Staunton, Lisa, Mullen, Edel, Manning, Gwen and Ohlendieck, Kay (2010) DIGE analysis of rat skeletal muscle proteins using nonionic detergent phase extraction of young adult versus aged gastrocnemius tissue. Journal of Proteomics, 73 (8). pp. 1441-1453. ISSN 1874-3919

Doorly, Catherine M. (2024) Investigating the Roles of the N-Degron Pathway in Regulating the Crosstalk Between Hypoxia and the Innate Immune Responses. PhD thesis, National University of Ireland Maynooth.

Doorly, Catherine M. and Graciet, Emmanuelle (2021) Lessons from Comparison of Hypoxia Signaling in Plants and Mammals. Plants, 10 (993). pp. 1-20. ISSN 2223-7747

Doran, Anthony Gerard (2013) Systems level investigation of the genetic basis of bovine muscle growth and development. PhD thesis, National University of Ireland Maynooth.

Doran, Philip, Donoghue, Pamela, O'Connell, Kathleen, Gannon, Joan and Ohlendieck, Kay (2007) Proteomic profiling of pathological and aged skeletal muscle fibres by peptide mass fingerprinting (Review). International Journal of Molecular Medicine, 19 (4). pp. 547-564. ISSN 1107-3756

Doran, Philip, Dowling, Paul, Donoghue, Pamela, Buffini, Maria and Ohlendieck, Kay (2006) Reduced expression of regucalcin in young and aged mdx diaphragm indicates abnormal cytosolic calcium handling in dystrophin-deficient muscle. Biochimica et Biophysica Acta - Proteins and Proteomics, 1764 (4). pp. 773-785. ISSN 1570-9639

Doran, Philip, Dowling, Paul, Lohan, James, McDonnell, Karen, Poetsch, Stephan and Ohlendieck, Kay (2004) Subproteomics analysis of Ca2+-binding proteins demonstrates decreased calsequestrin expression in dystrophic mouse skeletal muscle. European Journal of Biochemistry, 271 (19). pp. 3943-3952. ISSN 0014-2956

Doran, Philip, Gannon, Joan, O'Connell, Kathleen and Ohlendieck, Kay (2007) Aging skeletal muscle shows a drastic increase in the small heat shock proteins aB-crystallin/HspB5 and cvHsp/HspB7. European Journal of Cell Biology, 86 (10). pp. 629-640. ISSN 0171-9335

Doran, Philip, Gannon, Joan, O'Connell, Kathleen and Ohlendieck, Kay (2007) Proteomic profiling of animal models mimicking skeletal muscle disorders. Proteomics Clinical Applications, 1 (9). pp. 1169-1184. ISSN 1862-8346

Doran, Philip, Martin, Geraldine, Dowling, Paul, Jockusch, Harald and Ohlendieck, Kay (2006) Proteome analysis of the dystrophin-deficient MDX diaphragm reveals a drastic increase in the heat shock protein cvHSP. Proteomics, 6 (16). pp. 4610-4621. ISSN 1615-9853

Doran, Philip, O'Connell, Kathleen, Gannon, Joan, Kavanagh, Marcella and Ohlendieck, Kay (2008) Opposite pathobiochemical fate of pyruvate kinase and adenylate kinase in aged rat skeletal muscle as revealed by proteomic DIGE analysis. Proteomics, 8 (2). pp. 364-377. ISSN 1615-9853

Doran, Philip, Wilton, Steve D., Fletcher, Sue and Ohlendieck, Kay (2009) Proteomic profiling of antisense-induced exon skipping reveals reversal of pathobiochemical abnormalities in dystrophic mdx diaphragm. Proteomics, 9 (3). pp. 671-685. ISSN 1615-9853

Dowling, Paul, Clarke, Colin, Hennessy, Kim, Torralbo-Lopez, Beatriz, Ballot, Jo, Crown, John, Kiernan, Ingrid, O'Byrne, Kenneth J., Kennedy, M. John, Lynch, Vincent and Clynes, Martin (2012) Analysis of acute-phase proteins, AHSG, C3, CLI, HP and SAA, reveals distinctive expression patterns associated with breast, colorectal and lung cancer. International Journal of Cancer, 131 (4). pp. 911-923. ISSN 0020-7136

Dowling, Paul and Clynes, Martin (2011) Conditioned media from cell lines: A complementary model to clinical specimens for the discovery of diseasespecific biomarkers. Proteomics, 11 (4). pp. 794-804. ISSN 1615-9853

Dowling, Paul, Culligan, Kevin and Ohlendieck, Kay (2002) Distal mdx muscle groups exhibiting up-regulation of utrophin and rescue of dystrophin-associated glycoproteins exemplify a protected phenotype in muscular dystrophy. Naturwissenschaften, 89 (2). pp. 75-78. ISSN 0028-1042

Dowling, Paul, Doran, Philip, Lohan, James, Culligan, Kevin and Ohlendieck, Kay (2004) Naturally Protected Muscle Phenotypes: Development of Novel Treatment Strategies for Duchenne Muscular Dystrophy. Basic and applied myology : BAM, 14 (3). pp. 169-177. ISSN 1120-9992

Dowling, Paul, Doran, Philip and Ohlendieck, Kay (2004) Drastic reduction of sarcalumenin in Dp427 (dystrophin of 427 kDa)-deficient fibres indicates that abnormal calcium handling plays a key role in muscular dystrophy. Biochemical Journal, 379 (Pt.2). pp. 479-488. ISSN 0264-6021

Dowling, Paul, Gargan, Stephen, Zweyer, Margit, Henry, Michael, Meleady, Paula, Swandulla, Dieter and Ohlendieck, Kay (2020) Proteome-wide Changes in the mdx-4cv Spleen due to Pathophysiological Cross Talk with Dystrophin-Deficient Skeletal Muscle. iScience, 23 (101500). ISSN 2589-0042

Dowling, Paul, Gargan, Stephen, Zweyer, Margit, Henry, Michael, Meleady, Paula, Swandulla, Dieter and Ohlendieck, Kay (2020) Protocol for the Bottom-Up Proteomic Analysis of Mouse Spleen. STAR Protocols, 1 (100196). ISSN 2666-1667

Dowling, Paul, Gargan, Stephen, Zweyer, Margit, Sabir, Hemmen, Henry, Michael, Meleady, Paula, Swandulla, Dieter and Ohlendieck, Kay (2021) Proteomic profiling of the interface between the stomach wall and the pancreas in dystrophinopathy. European Journal of Translational Myology, 31 (1). ISSN 2037-7452

Dowling, Paul, Holland, Ashling and Ohlendieck, Kay (2014) Mass Spectrometry-Based Identification of Muscle-Associated and Muscle-Derived Proteomic Biomarkers of Dystrophinopathies. Journal of Neuromuscular Diseases, 1 (1). pp. 15-40. ISSN 2214-3599

Dowling, Paul, Lohan, James and Ohlendieck, Kay (2003) Comparative analysis of Dp427-deficient mdx tissues shows that the milder dystrophic phenotype of extraocular and toe muscle fibres is associated with a persistent expression of beta-dystroglycan. European Journal of Cell Biology, 82 (5). pp. 222-230. ISSN 0171-9335

Dowling, Paul, Maurya, Priyanka, Meleady, Paula, Glynn, Sharon, Dowd, Andrew, Henry, Michael and Clynes, Martin (2007) Purification and Identification of a 7.6-kDa Protein in Media Conditioned by Superinvasive Cancer Cells. Anticancer Research, 27 (3A). pp. 1309-1317. ISSN 0250-7005

Dowling, Paul, Meleady, Paula, Dowd, Andrew, Henry, Michael, Glynn, Sharon and Clynes, Martin (2007) Proteomic analysis of isolated membrane fractions from superinvasive cancer cells. Biochimica et Biophysica Acta - Proteins and Proteomics, 1774 (1). pp. 93-101. ISSN 1570-9639

Dowling, Paul, Murphy, Sandra, Zweyer, Margit, Raucamp, Maren, Swandulla, Dieter and Ohlendieck, Kay (2019) Emerging proteomic biomarkers of X-linked muscular dystrophy. Expert Review of Molecular Diagnostics, 19 (8). pp. 739-755. ISSN 1473-7159

Dowling, Paul, O'Driscoll, Lorraine, Meleady, Paula, Henry, Michael, Roy, Shunil, Ballot, Jo, Moriarty, Michael, Crown, John and Clynes, Martin (2007) 2-D difference gel electrophoresis of the lung squamous cell carcinoma versus normal sera demonstrates consistent alterations in the levels of ten specific proteins. Electrophoresis, 28 (23). pp. 4302-4310. ISSN 0173-0835

Dowling, Paul, O'Driscoll, Lorraine, O'Sullivan, Finbarr, Dowd, Andrew, Henry, Michael, Jeppesen, Per Bendix, Meleady, Paula and Clynes, Martin (2006) Proteomic screening of glucose-responsive and glucose non-responsive MIN-6 beta cells reveals differential expression of proteins involved in protein folding, secretion and oxidative stress. Proteomics, 6 (24). pp. 6578-6587. ISSN 1615-9853

Dowling, Paul, Shields, William, Rani, Sweta, Meleady, Paula, Henry, Michael, Jeppesen, Per Bendix, O'Driscoll, Lorraine and Clynes, Martin (2008) Proteomic analysis of conditioned media from glucose responsive and glucose nonresponsive phenotypes reveals a panel of secreted proteins associated with beta cell dysfunction. Electrophoresis, 29 (20). pp. 4141-4149. ISSN 0173-0835

Dowling, Paul, Tierney, Ciara, Dunphy, Katie, Miettinen, Juho J., Heckman, Caroline A., Bazou, Despina and O’Gorman, Peter (2021) Identification of Protein Biomarker Signatures for Acute Myeloid Leukemia (AML) Using Both Nontargeted and Targeted Approaches. Proteomes, 9 (4). p. 42. ISSN 2227-7382

Dowling, Paul, Walsh, Naomi and Clynes, Martin (2008) Membrane and membrane-associated proteins involved in the aggressive phenotype displayed by highly invasive cancer cells. Proteomics, 8 (19). pp. 4054-4065. ISSN 1615-9853

Dowling, Paul, Wormald, Robert, Meleady, Paula, Henry, Michael, Curran, Aongus and Clynes, Martin (2008) Analysis of the saliva proteome from patients with head and neck squamous cell carcinoma reveals differences in abundance levels of proteins associated with tumour progression and metastasis. Journal of Proteomics, 71 (2). pp. 168-175. ISSN 1874-3919

Dowling, Paul, Zweyer, Margit, Raucamp, Maren, Henry, Michael, Meleady, Paula, Swandulla, Dieter and Ohlendieck, Kay (2020) Dataset on the mass spectrometry-based proteomic profiling of the kidney from wild type and the dystrophic mdx-4cv mouse model of X-linked muscular dystrophy. Data in Brief, 28 (105067). pp. 1-9. ISSN 2352-3409

Dowling, Paul, Zweyer, Margit, Raucamp, Maren, Henry, Michael, Meleady, Paula, Swandulla, Dieter and Ohlendieck, Kay (2020) Proteomic and cell biological profiling of the renal phenotype of the mdx-4cv mouse model of Duchenne muscular dystrophy. European Journal of Cell Biology, 99 (151059). ISSN 0171-9335

Dowling, Paul, Zweyer, Margit, Swandulla, Dieter and Ohlendieck, Kay (2019) Characterization of Contractile Proteins from Skeletal Muscle Using Gel-Based Top-Down Proteomics. Proteomes, 7 (2). ISSN 2227-7382

Downer, Eric J., Clifford, Eileen, Amu, Sylvie, Fallon, Padraic G. and Moynagh, Paul N. (2012) The Synthetic Cannabinoid R(+)WIN55,212-2 Augments Interferon-β Expression via Peroxisome Proliferator-activated Receptor-α. Journal of Biological Chemistry, 287 (30). pp. 25440-25453. ISSN 0021-9258

Downer, Eric J., Clifford, Eileen, Gran, Bruno, Hendrik, J. Nel, Fallon, Padraig G. and Moynagh, Paul N. (2011) Identification of the Synthetic Cannabinoid R()WIN55,212-2 as a Novel Regulator of IFN Regulatory Factor 3 Activation and IFN- Expression. Journal of Biological Chemistry, 286 (12). pp. 10316-10328. ISSN 0021-9258

Downes, Martin (2006) Irish Universities in the Knowledge Society: Society's Sentinels and the Citizen's vade mecum. In: What Price the University? Perspectives on the Meaning and Value of Higher Education from the National University of Ireland, Maynooth. National University of Ireland Maynooth, Maynooth, Ireland, pp. 81-95. ISBN 0901519766

Downes, Shane G., Owens, Rebecca A., Walshe, Kieran, Fitzpatrick, David A., Dorey, Amber, Jones, Gary W. and Doyle, Sean (2023) Gliotoxin-mediated bacterial growth inhibition is caused by specific metal ion depletion. Scientific Reports, 13 (1). ISSN 2045-2322

Downey, Liam, Lawlor, Bob and Quinn, Ciaran (2013) GSE1 Postgraduate Information Literacy and Communication Skills Training-Project Orientated Delivery. In: NUI Maynooth Teaching and Learning Showcase 2012/13, 8th May, 2013, NUI Maynooth. (Unpublished)

Doyle, Sean (2011) Fungal proteomics: from identitcation to function. Microbiology Letters, 321. pp. 1-9.

Doyle, Sean and Corcoran, Amanda (2006) The Immune Response to Parvovirus B19 Exposure in previously Seronegative and Seropositive Individuals. Journal of Infectious Diseases, 194 (2). pp. 154-158. ISSN 0022-1899

Doyle, Sean, Mahon, Bernard P., Corcoran, A. and Daly, P. (2002) High-Sensitivity PCR Detection of Parvovirus B19 Plasma. Journal of Clinical Microbiology, 40 (6). pp. 1958-1962.

Doyle, Amanda A., Krämer, Tobias, Kavanagh, Kevin and Stephens, John C. (2019) Cinnamaldehydes: Synthesis, antibacterial evaluation, and the effect of molecular structure on antibacterial activity. Results in Chemistry, 1 (100013). ISSN 2211-7156

Doyle, Sarah L., Shirey, Kari Ann, McGettrick, Anne F., Kenny, Elaine F., Carpenter, Susan B., Caffrey, Brian E., Gardan, Siobhan, Quinn, Susan R., Cammano, Jorge H., Moynagh, Paul N., Vogel, Stefani N. and O'Neill, Luke A. (2013) NFκB2 p52 has a role in antiviral immunity through IKKε -dependent induction of Sp1 and IL-15. Journal of Biological Chemistry. ISSN 0021-9258

Doyle, Sarah L., Shirey, Kari Ann, McGettrick, Anne F., Kenny, Elaine F., Carpenter, Susan B., Caffrey, Brian E., Gargan, Siobhan, Quinn, Susan R., Caamano, Jorge H., Moynagh, Paul N., Vogel, Stefanie N. and O'Neill, Luke A. (2013) Nuclear Factor κB2 p52 Protein Has a Role in Antiviral Immunity through IκB Kinase ϵ-dependent Induction of Sp1 Protein and Interleukin 15. Journal of Biological Chemistry, 288. 25066 -25075. ISSN 0021-9258

Doyle, Sean (2011) The Detection of Parvoviruses. Methods in Molecular Biology, 665. pp. 213-231. ISSN 1064-3745

Doyle, Sean (2011) Fungal proteomics: from identification to function. FEMS Microbiology Letters, 321 (1). pp. 1-9. ISSN 0378-1097

Doyle, Sean (2001) Paravovirus B19 infection - an underestimated problem. In: The Irish Scientist. Samton Limited, p. 139. ISBN 1898706239

Doyle, Sean and Corcoran, Amanda (2004) Advances in the biology, diagnosis and host-pathogen interactions of parvovirus B19. Journal of Medical Microbiology, 53. pp. 1-17.

Doyle, Sean, Cuskelly, Daragh D., Conlon, Niall, Fitzpatrick, David A., Gilmartin, Ciara B., Dix, Sophia H. and Jones, Gary W. (2022) A Single Aspergillus fumigatus Gene Enables Ergothioneine Biosynthesis and Secretion by Saccharomyces cerevisiae. International Journal of Molecular Sciences, 23 (18). p. 10832. ISSN 1422-0067

Doyle, Sean and Daly, Paul (2003) The development of a competitive PCR-ELISA for the detection of equine herpesvirus-1. Journal of Virological Methods, 107 (2). pp. 237-244. ISSN 0166-0934

Doyle, Sean, Daly, Paul and Collier, T. (2002) PCR-ELISA detection of Escherichia coli in milk. Letters in Applied Microbiology, 34 (3). pp. 222-226. ISSN 0266-8254

Doyle, Sean, Fox, M., Gray, G. and Kavanagh, Kevin (2004) Detection of Aspergillus fumigatus mycotoxins: immunogen synthesis and immunoassay development. Journal of Microbiological Methods, 56 (2). pp. 221-230. ISSN 0167-7012

Doyle, Sean, Jones, Gary W. and Dolan, Stephen K. (2018) Dysregulated gliotoxin biosynthesis attenuates the production of unrelated biosynthetic gene cluster-encoded metabolites in Aspergillus fumigatus. Fungal Biology, 122. pp. 214-221. ISSN 1878-6146

Doyle, Sean, Kerr, S., O'Keeffe, Grainne, O'Carroll, D., Daly, P. and Kilty, C. (2000) Detection of parvovirus B19 IgM by antibody capture enzyme immunoassay: receiver operating characteristic analysis. Journal of Virological Methods, 90 (2). pp. 143-1522. ISSN 0166-0934

Doyle, Sean, Schininà, M.E., Bossa, F. and Doonan, S. (1990) The amino acid sequence of cytosolic aspartate aminotransferase from human liver. Biochemical Journal, 270 (3). pp. 651-657. ISSN 0264-6021

Drumm, Shauna D., Cormican, Paul, O’Boyle, Padraig, Owens, Rebecca A., Mitchell, Jennifer and Keane, Orla M. (2022) Immunoproteomic analysis of the secretome of bovine-adapted strains of Staphylococcus aureus demonstrates a strain-specific humoral response. Veterinary Immunology and Immunopathology, 249 (110428). pp. 1-11. ISSN 0165-2427

Duffy, Ken R. and Subramanian, Vijay G. (2009) On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics. Journal of Mathematical Biology, 59 (2). pp. 255-285. ISSN 1432-1416

Duffy, Brion, Holliger, E. and Walsh, Fiona (2014) Streptomycin use in apple orchards did not increase abundance of mobile resistance genes. FEMS Microbiology Letters, 350. pp. 180-189. ISSN 0378-1097

Duffy, C.P., Elliott, C.J., O'Connor, R.A., Heenan, M.M., Coyle, S., Cleary, I.M., Kavanagh, Kevin, Verhaegen, Steven, O'Loughlin, C.M., NicAmhlaoibh, R. and Clynes, Martin (1998) Enhancement of chemotherapeutic drug toxicity to human tumour cells in vitro by a subset of non-steroidal anti-inflammatory drugs (NSAIDs). European Journal of Cancer, 34 (8). pp. 1250-1259. ISSN 0959-8049

Duffy, Catriona (2018) Ips typographus. Irish Forestry Journal, 75 (1/2). pp. 167-169.

Duffy, Michelle M., Pindjakova, Jana, Hanley, Shirley A., McCarthy, Cathal, Weidhofer, Gudrun A., Sweeney, Eva M., English, Karen, Shaw, Georgina, Murphy, J. Mary, Barry, Frank P., Mahon, Bernard P., Belton, Orina, Ceredig, Rhodri and Griffin, Matthew D. (2011) Mesenchymal stem cell inhibition of T-helper 17 cell- differentiation is triggered by cell–cell contact and mediated by prostaglandin E2 via the EP4 receptor. European Journal of Immunology, 41 (10). pp. 2840-2851. ISSN 1521-4141

Dunbar, Hazel, Hawthorne, Ian J. and English, Karen (2024) Carbon monoxide licensing of MSCs enhances their efficacy through autophagy-mediated miRNA mechanisms. Molecular Therapy. ISSN 1525-0016

Dunbar, Hazel, Hawthorne, Ian J., McNamee, Eóin N., Armstrong, Michelle E., Donnelly, Seamas C. and English, Karen (2024) The human MIF polymorphism CATT7 enhances pro‐inflammatory macrophage polarization in a clinically relevant model of allergic airway inflammation. The FASEB Journal, 38 (6). ISSN 0892-6638

Dunbar, Hazel, Hawthorne, Ian J., Tunstead, Courteney, Armstrong, Michelle E., Donnelly, Seamas C. and English, Karen (2023) Blockade of MIF biological activity ameliorates house dust mite‐induced allergic airway inflammation in humanized MIF mice. The FASEB Journal, 37 (8). ISSN 0892-6638

Dunbar, Hazel, Hawthorne, Ian J., Tunstead, Courteney, McNamee, Eóin N., Weiss, Daniel J., Armstrong, Michelle E., Donnelly, Seamas C. and English, Karen (2024) Mesenchymal stromal cells dampen trained immunity in house dust mite-primed macrophages expressing human macrophage migration inhibitory factor polymorphism. Cytotherapy, 26 (10). pp. 1245-1251. ISSN 1465-3249

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Dunne, Aisling (2011) Can Plant Plastid Produce a Candidate Influenza Vaccine? PhD thesis, National University of Ireland Maynooth.

Dunphy, Katie (2024) Utilising proteomics-derived data to identify novel biomarker signatures in Multiple Myeloma. PhD thesis, National University of Ireland Maynooth.

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Eissing, Thomas, Waldherr, Steffen, Gondro, Cedric, Bullinger, Eric, Sawodny, Oliver , Allgöwer, Frank, Scheurich, Peter and Sauter, Thomas (2006) Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during Tumor Necrosis Factor stimulation. In: Proceedings of the 2006 IEEE International Conference on Control Applications Munich, Germany, October 4-6, 2006. IEEE, pp. 1746-1752. ISBN 0-7803-9797-5

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Ellabib, M.S., Agaj, M., Khalifa, Z. and Kavanagh, Kevin (2002) Yeasts of the genus Candida are the dominant cause of onychomycosis in Libyan women but not men: results of a 2-year surveillance study. British Journal of Dermatology, 146 (6). pp. 1038-1041. ISSN 0007-0963

Ellabib, M.S., Khalifa, Z. and Kavanagh, Kevin (2002) Dermatophytes and other fungi associated with skin mycoses in Tripoli, Libya. Mycoses, 45 (3-4). pp. 101-104. ISSN 0933-7407

Ellabib, M.S., Refaai, A., Khalifa, Z. and Kavanagh, Kevin (2003) Isolation and identification of Madurella mycetomatis from two cases of black grain mycetoma in Libya. Mycoses, 46 (8). pp. 321-323. ISSN 0933-7407

Elramli, Nadia (2017) Role of Striatin Complexes in the Control of Development and Secondary Metabolism of the Filamentous Fungus Aspergillus nidulans. PhD thesis, National University of Ireland Maynooth.

Elramli, Nadia, Karahoda, Betim, Bayram, Ozlem Sarikaya, Frawley, Dean, Ulas, Mevlut, Oakley, C. Elizabeth, Oakley, Berl, Seiler, Stephan and Bayram, Ozgur (2019) Assembly of a heptameric STRIPAK complex is required for coordination of light-dependent multicellular fungal development with secondary metabolism in Aspergillus nidulans. PLos Genetics, 15 (3). e1008053. ISSN 1553-7390

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English, Karen, Brady, Claire, Corcoran, Paul, Cassidy, Joseph P. and Mahon, Bernard P. (2006) Inflammation of the respiratory tract is associated with CCL28 and CCR10 expression in a murine model of allergic asthma. Immunology Letters, 103 (2). pp. 92-100. ISSN 0165-2478

English, Jane A., Lopez, Lorna, OGorman, Aoife, Focking, Melanie, Hryniewicka, Magdalena, Scaife, Caitriona, Sabherwal, Sophie, Wynne, Kieran, Dicker, Patrick, Rutten, Bart P.F., Lewis, Glynn, Zammit, Stanley, Cannon, Mary, Cagney, Gerard and Cotter, David R. (2018) Blood-Based Protein Changes in Childhood Are Associated With Increased Risk for Later Psychotic Disorder: Evidence From a Nested Case–Control Study of the ALSPAC Longitudinal Birth Cohort. Schizophrenia Bulletin, 44 (2). pp. 297-306. ISSN 0586-7614

English, Karen (2023) Apoptotic MSCs, COX2/PGE2 and clinical efficacy in Crohn fistula. Molecular Therapy, 31 (12). ISSN 15250016

English, Karen (2011) Intervertebral Disc Repair: Mesenchymal Stem Cells to the Rescue? Transplantation, 92 (7). pp. 733-734. ISSN 0041-1337

English, Karen (2013) Mechanisms of mesenchymal stromal cell immunomodulation. Immunology and Cell Biology, 91. pp. 19-26. ISSN 1440-1711

English, Karen, Barry, Frank P., Field-Corbett, Ciara and Mahon, Bernard P. (2007) IFN-y and TNF-x differentially regulate immunomodulation by murine mesenchymal stem cells. Immunology Letters, 110. pp. 91-100. ISSN 1879-0542

English, Karen, Brady, Claire, Corcoran, Paul, Cassidy, Joseph P. and Mahon, Bernard P. (2006) Inflammation of the respiratory tract is associated with CCL28 andCCR10 expression in a murine model of allergic asthma. Immunology Letters, 103. pp. 92-100. ISSN 0165-2478

English, Karen, French, Anna and Wood, Kathryn J. (2010) Mesenchymal Stromal Cells: Facilitators of Successful Transplantation? Cell Stem Cell, 7. pp. 431-442. ISSN 1875-9777

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English, Karen, Mahon, Bernard P. and Wood, Kathryn J. (2014) Mesenchymal Stromal Cells; Role in Tissue Repair, Drug Discovery and Immune Modulation. Current Drug Delivery, 11 (5). pp. 561-571. ISSN 1567-2018

English, Karen, Ryan, J.M., Tobin, L., Murphy, M.J., Barry, Frank P. and Mahon, Bernard P. (2009) Cell contact, prostaglandin E2 and transforming growth factor beta 1 play non-redundant roles in human mesenchymal stem cell induction of CD4+CD25High forkhead box P3+ regulatory T cells. Clinical and Experimental Immunology, 156. pp. 149-160.

English, Karen, Tonlorenzi, Rossana, Cossu, Giulio and Wood, Kathryn J (2013) Mesoangioblasts Suppress T Cell Proliferation Through IDO and PGE-2-Dependent Pathways. Stem Cells and Development, 22 (3). pp. 512-523. ISSN 1547-3287

English, Karen and Wood, Kathryn J. (2013) Mesenchymal Stromal Cells in Transplantation Rejection and Tolerance. Cold Spring Harbor perspectives in medicine, 3. ISSN 2157-1422

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Ennis, Darragh E., Dillon, Aoife B. and Griffin, Christine (2010) Pine weevils modulate defensive behaviour in response to parasites of differing virulence. Animal Behaviour, 80. pp. 283-288. ISSN 0003-3472

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Enright, Michael R. and Griffin, Christine (2005) Effects of Paenibacillus nematophilus on the entomopathogenic nematode Heterorhabditis megidis. Journal of Invertebrate Pathology, 88. pp. 40-48.

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Eshwika, Ahmed, Kelly, Judy, Fallon, John P. and Kavanagh, Kevin (2013) Exposure of Aspergillus fumigatus to caspofungin results in the release, and de novo biosynthesis, of gliotoxin. Medical Mycology, 51. pp. 121-127. ISSN 1232-986X

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Fitzpatrick, David A. and McInerney, James O. (2005) Evidence of Positive Darwinian Selection in Omp85, a Highly Conserved Bacterial Outer Membrane Protein Essential for Cell Viability. Journal of Molecular Evolution, 61 (1). pp. 90-98.

Fitzpatrick, David A., O'Gaora, Peadar, Byrne, Kevin P. and Butler, Geraldine (2010) Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser. BMC Genomics, 11 (290). pp. 1-14. ISSN 1471-2164

Fitzpatrick, David A. and O'Halloran, Damien M. (2012) Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network. International Journal of Evolutionary Biology, 2012 (548081). ISSN 2090-052X

Fitzpatrick, David A., O'Halloran, Damien M. and Burnell, Ann (2006) Multiple lineage specific expansions within the guanylyl cyclase gene family. BMC Evolutionary Biology, 6. pp. 26-43. ISSN 1471-2148

Fitzpatrick, David A. (2009) Lines of Evidence for Horizontal Gene Transfer of a Phenazine Producing Operon into Multiple Bacterial Species. Journal of Molecular Evolution, 68 (2). pp. 171-185. ISSN 0022-2844

Fitzpatrick, David A. (2004) A study of selection and recombination in microorganisms and a place for the mitochondrion among the a-proteobacteria. PhD thesis, National University of Ireland Maynooth.

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Flynn, Ciara (2014) Nocturnal Lepidoptera of Midland Raised Bogs. Masters thesis, National University of Ireland Maynooth.

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Frasch, S. Courtney, McNamee, Eóin N., Kominsky, Douglas J., Jedlicka, Paul, Jakubzick, Claudia, Berry, Karin Zemski, Mack, Matthias, Furuta, Glenn T., Lee, James J., Henson, Peter M., Colgan, S.P. and Bratton, Donna L. (2016) G2A Signaling Dampens Colitic Inflammation via Production of IFN-γ. Journal of Immunology, 197. pp. 1425-1434. ISSN 0022-1767

Frawley, Dean (2020) The Roles of a Conserved MAP Kinase Pathway in the Regulation of Development and Secondary Metabolism in Aspergillus Species. PhD thesis, National University of Ireland Maynooth.

Frawley, Dean and Bayram, Ozgur (2020) Identification of SkpA-CulA-F-box E3 ligase complexes in pathogenic Aspergilli. Fungal Genetics and Biology, 140. p. 103396. ISSN 10871845

Frawley, Dean and Bayram, Ozgur (2020) The pheromone response module, a mitogen-activated protein kinase pathway implicated in the regulation of fungal development, secondary metabolism and pathogenicity. Fungal Genetics and Biology, 144. p. 103469. ISSN 10871845

Frawley, Dean, Greco, Claudio, Oakley, Berl, Alhussain, Mohamed M., Fleming, Alastair B., Keller, Nancy and Bayram, Ozgur (2019) The tetrameric pheromone module SteC‐MkkB‐MpkB‐SteD regulates asexual sporulation, sclerotia formation and aflatoxin production in Aspergillus flavus. Cellular Microbiology, 22 (6). e13192. ISSN 1462-5822

Frawley, Dean, Karahoda, Betim, Bayram, Ozlem Sarikaya and Bayram, Ozgur (2018) The HamE scaffold positively regulates MpkB phosphorylation to promote development and secondary metabolism in Aspergillus nidulans. Scientific Reports, 8 (16588). ISSN 2045-2322

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Freitag, Michael, Höfer, Annalena M., Harting, Rebekka, Aßmann, Nils F., Gerke, Jennifer, Schmitt, Kerstin, Starke, Jessica, Bayram, Ozgur, Tran, Van-Tuan, Valerius, Oliver, Braus-Stromeyer, Susanna A. and Braus, Gerhard H. (2021) The velvet protein Vel1 controls initial plant root colonization and conidia formation for xylem distribution in Verticillium wilt. PLOS Genetics, 17 (3). e1009434. ISSN 1553-7404

Freitag, Michael, Sarikaya Bayram, Özlem, Bayram, Ozgur, Karahoda, Betim, Meister, Cindy, Köhler, Anna M., Thieme, Sabine, Elramli, Nadia, Frawley, Dean, McGowan, Jamie, Fitzpatrick, David A., Schmitt, Kerstin, de Assis, Leandro Jose, Valerius, Oliver, Goldman, Gustavo H. and Braus, Gerhard H. (2022) F-box receptor mediated control of substrate stability and subcellular location organizes cellular development of Aspergillus nidulans. PLOS Genetics, 18 (12). e1010502. ISSN 1553-7404

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Fullam, Anthony (2013) The role of the DEAD box Helicase DDX3X in Anti-­‐Viral Signalling Pathways Mediated by the Kinase IKKα. PhD thesis, National University of Ireland Maynooth.

Fullam, Anthony, Gu, Lili, Höhn, Yvette and Schroeder, Martina (2018) DDX3 directly facilitates IKKα activation and regulates downstream signalling pathways. Biochemical Journal, 475. pp. 3595-3607. ISSN 0264-6021

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Gaffney, Mark, Doyle, Sean and Murphy, Richard (2009) Optimization of Xylanase Production by Thermomyces Ianuginosus in Solid State Fermentation. Bioscience, Biotechnology, and Biochemistry, 74 (12). pp. 2640-2644. ISSN 0916-8451

Gallagher, Lorna (2010) Functional Genomic Analysis of Natural Product Biosynthesis and Secretion in Aspergillus fumigatus. PhD thesis, National University of Ireland Maynooth.

Gallagher, Catriona, Mahon, Julie Mac, O’Neill, Chloe, Cassidy, Féaron C., Dunbar, Hazel, De Barra, Conor, Cadden, Caoimhe, Pisarska, Marta M., Wood, Nicole, Masterson, Joanne C., McNamee, Eoin N., English, Karen, O’Shea, Donal, Tobin, Anne Marie and Hogan, Andrew E. (2023) Mucosal associated invariant T cells are altered in patients with Hidradenitis Suppurativa and contribute to the inflammatory milieu. Journal of Investigative Dermatology, 143 (6). pp. 1094-1097. ISSN 0022-202X

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Gargan, Siobhan (2011) Probing the Mechanisms Underlying the Regulatory Effects of Cactin in Innate Immune Signalling Pathways. PhD thesis, National University of Ireland Maynooth.

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Gargan, Stephen, Dowling, Paul, Zweyer, Margit, Reimann, Jens, Henry, Michael, Meleady, Paula, Swandulla, Dieter and Ohlendieck, Kay (2021) Mass Spectrometric Profiling of Extraocular Muscle and Proteomic Adaptations in the mdx-4cv Model of Duchenne Muscular Dystrophy. Life, 11 (7). p. 595. ISSN 2075-1729

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Gekenidis, Maria-Theresia, Rigotti, Serena, Hummerjohann, Jorg, Walsh, Fiona and Drissner, David (2020) Long-Term Persistence of blaCTX-M-15 in Soil and Lettuce after Introducing Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli via Manure or Water. Microorganisms, 8 (11). pp. 1-18. ISSN 2076-2607

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Gerke, Jennifer, Bayram, Ozgur, Feussner, Kirstin, Landesfeind, Manuel, Shelest, Ekaterina, Feussner, Ivo and Braus, Gerhard H. (2012) Breaking the Silence: Protein Stabilization Uncovers Silenced Biosynthetic Gene Clusters in the Fungus Aspergillus nidulans. Applied and Environmental Microbiology, 78 (23). pp. 8234-8244. ISSN 0099-2240

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Gibson, Greg, Thun, Gian Andri, Imboden, Medea, Ferrarotti, Ilaria, Kumar, Ashish, Obeidat, Ma'en, Zorzetto, Michele, Haun, Margot, Curjuric, Ivan, Couto Alves, Alexessander, Jackson, Victoria E., Albrecht, Eva, Ried, Janina S., Teumer, Alexander, Lopez, Lorna M., Huffman, Jennifer E., Enroth, Stefan, Bossé, Yohan, Hao, Ke, Timens, Wim, Gyllensten, Ulf, Polasek, Ozren, Wilson, James F., Rudan, Igor, Hayward, Caroline, Sandford, Andrew J., Deary, Ian J., Koch, Beate, Reischl, Eva, Schulz, Holger, Hui, Jennie, James, Alan L., Rochat, Thierry, Russi, Erich W., Jarvelin, Marjo-Riitta, Strachan, David P., Hall, Ian P., Tobin, Martin D., Dahl, Morten, Fallgaard Nielsen, Sune, Nordestgaard, Børge G., Kronenberg, Florian, Luisetti, Maurizio and Probst-Hensch, Nicole M. (2013) Causal and Synthetic Associations of Variants in the SERPINA Gene Cluster with Alpha1-antitrypsin Serum Levels. PLoS Genetics, 9 (8). e1003585. ISSN 1553-7404

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Gilbert, Jennifer L. (2009) The Role of Bone Morphogenetic Protein (BMP) Signalling in Lung Cancer and Lung Regeneration. PhD thesis, National University of Ireland Maynooth.

Gildea, Sarah, Fitzpatrick, David A. and Cullinane, Ann (2013) Epidemiological and virological investigations of equine influenza outbreaks in Ireland (2010–2012). Influenza and Other Respiratory Viruses, 7 (S.4). pp. 61-74. ISSN 1750-2659

Girling, R.D., Ennis, D., Dillon, A.B. and Griffin, Christine (2010) The lethal and sub-lethal consequences of entomopathogenic nematode infestation and exposure for adult pine weevils, Hylobius abietis (Coleoptera: Curculionidae). Journal of Invertebrate Pathology, 104 (3). pp. 195-202. ISSN 0022-2011

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Gonzalez-Rabade, Nuria, McGowan, Edward G., Zhou, Fei, McCabe, Matthew, Bock, Ralph, Dix, Philip, Gray, John C. and Ma, Julian K-C. (2011) Immunogenicity of chloroplast-derived HIV-1 p24 and a p24-Nef fusion protein following subcutaneous and oral administration in mice. Plant Biotechnology Journal, 9 (6). pp. 629-638. ISSN 1467-7644

Goslin, Kevin (2019) Characterization of the Ubiquitin N-end Rule Pathway in Arabidopsis. PhD thesis, National University of Ireland Maynooth.

Goslin, Kevin, Eschen-Lippold, Lennart, Naumann, Christin, Linster, Eric, Sorel, Maud, Klecker, Maria, de Marchi, Remi, Kind, Anne, Wirtz, Markus, Lee, Justin, Dissmeyer, Nico and Graciet, Emmanuelle (2019) Differential N-end rule degradation of RIN4/NOI fragments generated by the AvrRpt2 effector protease. Plant Physiology, 180. pp. 2272-2289. ISSN 1532-2548

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Goyal, K., Browne, J.A., Burnell, Ann and Tunnacliffe, A. (2005) Dehydration-induced tps gene transcripts from an anhydrobiotic nematode contain novel spliced leaders and encode atypical GT-20 family proteins. Biochimie, 87. pp. 565-574.

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Graciet, Emmanuelle, Hu, Rong-Gui, Piatkov, Konstantin, Rhee, Joon Haeng, Schwarz, Erich M. and Varshavsky, Alexander (2006) Aminoacyl-transferases and the N-end rule pathway of prokaryotic/eukaryotic specificity in a human pathogen. Proceedings of the National Academy of Sciences, 103 (9). pp. 3078-3083. ISSN 1091-6490

Graciet, Emmanuelle, Lebreton, Sandrine, Camadro, Jean-Michel and Gontero, Brigitte (2003) Characterization of native and recombinant A4 glyceraldehyde 3-phosphate dehydrogenase. Kinetic evidence for conformation changes upon association with the small protein CP12. European Journal of Biochemistry, 270 (1). pp. 129-136. ISSN 0014-2956

Graciet, Emmanuelle, Lebreton, Sandrine, Camadro, Jean-Michel and Gontero, Brigitte (2002) Thermodynamic Analysis of the Emergence of New Regulatory Properties in a Phosphoribulokinase-Glyceraldehyde 3-Phosphate Dehydrogenase Complex. Journal of Biological Chemistry, 277 (15). pp. 12697-12702. ISSN 0021-9258

Graciet, Emmanuelle, Lebreton, Sandrine and Gontero, Brigitte (2004) Emergence of new regulatory mechanisms in the Benson-Calvin pathway via protein-protein interactions: a glyceraldehyde-3-phosphate dehydrogenase/CP12/phosphoribulokinase complex. Journal of Experimental Botany, 55 (400). pp. 1245-1254. ISSN 0022-0957

Graciet, Emmanuelle, Mesiti, Francesca and Wellmer, Frank (2010) Structure and evolutionary conservation of the plant N-end rule pathway. The Plant Journal, 61. pp. 741-751. ISSN 0960-7412

Graciet, Emmanuelle, Mulliert, Guillermo, Lebreton, Sandrine and Gontero, Brigitte (2004) Involvement of two positively charged residues of Chlamydomonas reinhardtii glyceraldehyde-3-phosphate dehydrogenase in the assembly process of a bi-enzyme complex involved in CO2 assimilation. European Journal of Biochemistry, 271 (23-24). pp. 4737-4744. ISSN 0014-2956

Graciet, Emmanuelle, Walter, Franziska, Ó’Maoiléidigh, Diarmuid S., Pollmann, Stephan, Meyerowitz, Elliot M., Varshavsky, Alexander and Wellmer, Frank (2009) The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf development. Proceedings of the National Academy of Sciences, 106 (32). pp. 13618-13623. ISSN 1091-6490

Graciet, Emmanuelle and Wellmer, Frank (2010) The plant N-end rule pathway: structure and functions. Trends in Plant Science, 15 (8). pp. 447-453. ISSN 1878-4372

Graciet, Emmanuelle, Ó'Maoiléidigh, Diarmuid S. and Wellmer, Frank (2014) Next-Generation Sequencing Applied to Flower Development (ChIP-Seq). In: Flower Development. Methods in Molecular Biology (Methods and Protocols) (1110). Humana Press, pp. 413-429. ISBN 9781461494089

Grant, Olga M., Brennan, Donal P., Mellisho Salas, Carmen D. and Dix, Philip (2014) Impact of Enhanced Capacity to Scavenge Reactive Oxygen Species on Cold Tolerance of Tobacco. International Journal of Plant Sciences, 175 (5). pp. 544-554. ISSN 1058-5893

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Griffin, Bryan D., Mellett, Mark, Campos-Torres, Antonio, Kinsella, Gemma K., Wang, Bingwei and Moynagh, Paul N. (2011) A poxviral homolog of the Pellino protein inhibits Toll and Toll-like receptor signalling. European Journal of Immunology, 41 (3). pp. 798-812.

Griffin, Christine, Boemare, N.E. and Lewis, E.E. (2005) Biology and Behaviour. In: Nematodes as biocontrol agents. CAB International, pp. 47-64. ISBN 0851990177

Griffin, Christine (2012) Perspectives on the Behavior of Entomopathogenic Nematodes from Dispersal to Reproduction: Traits Contributing to Nematode Fitness and Biocontrol Efficacy. Journal of Nematology, 44 (2). pp. 177-184. ISSN 0022-300X

Griffin, Christine, Dix, Ilona, Joyce, Susan A., Burnell, Ann and Downes, Martin (1999) Isolation and characterisation of Heterorhabditis spp. (Nematoda: Heterorhabditidae) from Hungary, Estonia and Denmark. Nematology, 1 (3). pp. 321-332.

Griffin, Christine, Joyce, Susan A., Dix, Ilona, Burnell, Ann and Downes, Martin (1994) Characterisation of the entomopathogenic nematode Heterorhabditk (Nematoda : Heterorhabditidae) from Ireland and Britain by molecular and cross-breeding techniques,and the occurrence of the genus in these islands. Fundalmental Applied Nematology, 17 (3). pp. 245-253.

Griffin, Matthew D., Ritter, Thomas and Mahon, Bernard P. (2010) Immunological Aspects of Allogeneic Mesenchymal Stem Cell Therapies. Human Gene Theraphy, 21 (12). pp. 1641-1655.

Griffin, Bryan D. and Moynagh, Paul N. (2006) In vivo binding of NF-κB to the IκBβ promoter is insufficient for transcriptional activation. Biochemical Journal, 400. pp. 115-125. ISSN 0264-6021

Griffin, Bryan D. and Moynagh, Paul N. (2006) Persistent Interleukin-1β Signaling Causes Long Term Activation of NFκB in a Promoter-specific Manner in Human Glial Cells. Journal of Biological Chemistry, 281 (15). pp. 10316-10326. ISSN 0021-9258

Griffin, Christine, Chaerani, R., Fallon, D., Reid, A.P. and Downes, Martin (2000) Occurrence and distribution of the entomopathogenic nematodes Steinernema spp. and Heterorhabditis indica in Indonesia. Journal of Helminthology, 74 (2). pp. 143-150. ISSN 0022-149X

Griffin, Christine, O'Callaghan, K.M. and Dix, I. (2001) A self-fertile species of Steinernema from Indonesia: further evidence of convergent evolution amongst entomopathogenic nematodes? Parasitology, 122. pp. 181-186. ISSN 0031-1820

Griffin, Christine (2015) Behaviour and Population Dynamics of Entomopathogenic Nematodes Following Application. In: Nematode Pathogenesis of Insects and Other Pests. Springer, pp. 57-95. ISBN 9783319182650

Griffin, Matthew D., Elliman, Stephen J, Cahill, Emer and English, Karen (2013) Concise Review: Adult Mesenchymal Stromal Cell Therapy for Inflammatory Diseases: How Well Are We Joining the Dots? Stem Cells, 31. pp. 2033-2041. ISSN 1549-4918

Griffin, Steven (2015) Production and characterisation of yeast cell wall preparations with binding activity against Salmonella and Escherichia coli. PhD thesis, National University of Ireland Maynooth.

Griffith, Darren M., Duff, Brian, Suponitsky, Kyrill Y., Kavanagh, Kevin, Morgan, Maria P., Egan, Denise and Marmion, Celine J. (2011) Novel trans-platinum complexes of the histone deacetylase inhibitor valproic acid; synthesis, in vitro cytotoxicity and mutagenicity. Journal of Inorganic Biochemistry, 105 (6). pp. 793-799. ISSN 0162-0134

Grozdanovic, Milica, Laffey, Kimberly G, Abdelkarim, Hazem, Hitchinson, Ben, Harijith, Anantha, Moon, Hyung-Geon, Park, Gye Young, Rousslang, Lee K., Masterson, Joanne C., Furuta, Glenn T., Tarasova, Nadya I., Gaponenko, Vadim and Ackerman, Steven J. (2019) Novel Peptide Nanoparticle Biased Antagonist of CCR3 Blocks Eosinophil Recruitment and Airway Hyperresponsiveness. Journal of Allergy and Clinical Immunology, 143 (2). pp. 669-680. ISSN 0091-6749

Gu, Lili, Fullam, Anthony, Brennan, Ruth and Schroeder, Martina (2013) Human DEAD Box Helicase 3 Couples IκB Kinase ε to Interferon Regulatory Factor 3 Activation. Molecular and Cellular Biology, 33 (10). pp. 2004-2015. ISSN 0270-7306

Gu, Lili, Fullam, Anthony, McCormack, Niamh, Höhn, Yvette and Schroeder, Martina (2017) DDX3 directly regulates TRAF3 ubiquitination and acts as a scaffold to coordinate assembly of signalling complexes downstream of MAVS. Biochemical Journal, 474 (4). pp. 571-587. ISSN 0264-6021

Gupta, Saket, Maratha, Ashwini, Natarajan, Anandan, Miggin, Sinead and Hoashi, Shu (2017) Analysis of Inflammatory Cytokines in Pre-Diabetic Subjects. Current Research in Diabetes & Obesity Journal, 4 (5).

Gupta, Saket, Maratha, Ashwini, Siednienko, Jakub, Natarajan, Anandan, Gajanayake, Thusitha, Hoashi, Shu and Miggin, Sinead (2017) Analysis of inflammatory cytokine and TLR expression levels in Type 2 Diabetes with complications. Scientific Reports, 7. p. 7633. ISSN 2045-2322

Guy, Adam, Gaffney, Michael, Kapranas, Apostolos and Griffin, Christine (2017) Conditioning the entomopathogenic nematodes Steinernema carpocapsae and Heterorhabditis megidis by pre-application storage improves efficacy against black vine weevil, Otiorhynchus sulcatus (Coleoptera: Curculionidae) at low and moderate temperatures. Biological Control, 108. pp. 40-46. ISSN 1049-9644

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Haggerty, Leanne S. (2012) Exploring the Non-vertical Component of Bacterial Evolution Using Network Structures. PhD thesis, National University of Ireland Maynooth.

Haggerty, Leanne S., Jachiet, Pierre-Alain, Hanage, William P., Fitzpatrick, David A., Lopez, Philippe, O'Connell, Mary J., Pisani, Davide, Wilkinson, Mark, Bapteste, Eric and McInerney, James O. (2014) A Pluralistic Account of Homology: Adapting the Models to the Data. Molecular Biology and Evolution, 31 (3). pp. 501-506. ISSN 0737-4038

Haggerty, Leanne S., Martin, Fergal J., Fitzpatrick, David A. and McInerney, James O. (2009) Gene and genome trees conflict at many levels. Philosophical Transactions of the Royal Society B, 364 (1527). pp. 2209-2219. ISSN 0080-4622

Hamilton, Sinead C. (2012) Environmentally Influenced Duplication Patterns Followed by Functional Shifts Fueling the Evolution of Metazoan Sensory Systems. PhD thesis, National University of Ireland Maynooth.

Hammel, Stephen (2013) Characterising the response to gliotoxin exposure in Aspergillus fumigatus ΔgliT and ΔgliZ. PhD thesis, National University of Ireland Maynooth.

Hams, Emily, Bermingham, Rachel, Wurlod, Felicity A., Hogan, Andrew E., O'Shea, Donal, Preston, Roger J., Rodewald, Hans-Reimer, McKenzie, Andrew N.J. and Fallon, Padraic G. (2016) The helminth T2 RNase v1 promotes metabolic homeostasis in an IL-33– and group 2 innate lymphoid cell–dependent mechanism. The FASEB Journal, 30. pp. 824-835. ISSN 0892-6638

Hams, Emily, Saunders, Sean P., Cummins, Eoin P., O'Connor, Aisling, Tambuwala, Murtaza T., Gallagher, William M., Byrne, Annette, Compos-Torres, Antonio, Moynagh, Paul N., Jobin, Christian, Taylor, Cormac T and Fallon, Padraic G. (2011) The hydroxylase inhibitor DMOG attenuates endotoxic shock via alternative activation of macrophages and IL-10 production by B-1 cells. Shock, 36 (3). pp. 295-302. ISSN 1073-2322

Hanson, Sara J, Cinnéide, Eoin Ó, Salzberg, Letal I, Wolfe, Kenneth H, McGowan, Jamie, Fitzpatrick, David A., Matlin, Kate and Berman, J (2021) Genomic diversity, chromosomal rearrangements, and interspecies hybridization in the Ogataea polymorpha species complex. G3 Genes|Genomes|Genetics, 11 (8). pp. 1-18. ISSN 2160-1836

Hanuszkiewicz, Anna, Pittock, Paula, Humphries, Fiachra, Moll, Hermann, Rosales, Amanda Roa, Molinaro, Antonio, Moynagh, Paul N., Lajoie, Gilles A. and Valvona, Miguel A. (2014) Identification of the Flagellin Glycosylation System in Burkholderia cenocepacia and the Contribution of Glycosylated Flagellin to Evasion of Human Innate Immune Responses. Journal of Biological Chemistry, 289 (27). pp. 19231-19244. ISSN 0021-9258

Harmon, Cathal, Jameson, Gráinne, Almuaili, Dalal, Houlihan, Diarmaid D., Hoti, Emir, Geoghegan, Justin, Robinson, Mark W. and O'Farrelly, Cliona (2019) Liver-Derived TGF-ß Maintains the EomeshiTbetlo Phenotype of Liver Resident Natural Killer Cells. Frontiers in Immunology, 10 (1502). ISSN 1664-3224

Harmon, Cathal, O'Farrelly, Cliona and Robinson, Mark W. (2020) The Immune Consequences of Lactate in the Tumor Microenvironment. In: Tumor Microenvironment. Advances in Experimental Medicine and Biology book series: AEMB (1259). Springer, Cham, Switzerland, pp. 113-124. ISBN 9783030430931 (Submitted)

Harmon, Cathal, Robinson, Mark W., Fahey, Ronan, Whelan, Sarah, Houlihan, Diarmaid D., Geoghegan, Justin and O'Farrelly, Cliona (2016) Tissue-resident Eomes(hi) T-bet(lo) CD56(bright) NK cells with reduced proinflammatory potential are enriched in the adult human liver. European Journal of Immunology, 46 (9). ISSN 1521-4141

Harmon, Cathal, Robinson, Mark W., Hand, Fiona, Almuaili, Dalal, Mentor, Keno, Houlihan, Diarmaid D., Hoti, Emir, Lynch, Lydia, Geoghegan, Justin and O'Farrelly, Cliona (2018) Lactate-Mediated Acidification of Tumor Microenvironment Induces Apoptosis of LiverResident NK Cells in Colorectal Liver Metastasis. Cancer Immunology Research, 7 (2). p. 2018. ISSN 2326-6066

Harns, Emily, Roberts, Joseph, Bermingham, Rachel, Hogan, Andrew E., O'Shea, Donal, O'Neill, Luke and Fallon, Padraic G. (2020) Role for Retinoic Acid-Related Orphan Receptor Alpha (RORα) Expressing Macrophages in Diet-Induced Obesity. Frontiers in Immunology, 11 (1966). pp. 1-13. ISSN 1664-3224

Harris, J. Kirk, Fang, R., Wagner, Brandie D., Choe, Ha Na, Kelly, Caleb J., Schroeder, Shauna, Moore, Wendy, Stevens, Mark J., Yeckes, Alyson, Amsden, Katie, Kagalwalla, Amir F., Zalewski, Angelika, Hirano, Ikuo, Gonsalves, Nirmala, Henry, Lauren N., Masterson, Joanne C., Robertson, Charles E., Leung, Donald Y., Pace, Norman R., Ackerman, Steven J., Furuta, Glenn T. and Fillon, Sophie A. (2015) Esophageal Microbiome in Eosinophilic Esophagitis. PLoS ONE, 10 (5). e0128346. ISSN 1932-6203

Harting, Rebekka, Bayram, Ozgur, Laubinger, Karen, Valerius, Oliver and Braus, Gerhard H. (2013) Interplay of the fungal sumoylationnet work for control of multicellular development. Molecular Microbiology, 90 (5). pp. 1125-1145. ISSN 1365-2958

Hartley, Cathryn J. (2017) Pheromones in entomopathogenic nematodes: effects on dispersal and reproductive behaviours. PhD thesis, National University of Ireland Maynooth.

Hartley, Cathryn J., Lillis, Peter E., Owens, Rebecca A. and Griffin, Christine (2019) Infective juveniles of entomopathogenic nematodes (Steinernema and Heterorhabditis) secrete ascarosides and respond to interspecific dispersal signals. Journal of Invertebrate Pathology, 168 (107257). ISSN 0022-2011

Harvey, Christopher D. (2010) Ecological impact of entomopathogenic nematodes used to control the large pine weevil, Hylobius abietis (Coleoptera: Curculionidae). PhD thesis, National University of Ireland Maynooth.

Harvey, Deirdre, Smith, Roisin, English, Karen, Mahon, Bernard P. and Commins, Sean (2006) Interleukin-10 (IL-10) but not Lipopolysaccharide (LPS) produces increased motor activity and abnormal exploratory patterns while impairing spatial learning in Balb/c mice. Physiology & Behavior, 87. pp. 842-847. ISSN 0031-9384/

Harvey, Christopher D., Alameen, Khalil M. and Griffin, Christine (2012) The impact of entomopathogenic nematodes on a non-target, service-providing longhorn beetle is limited by targeted application when controlling forestry pest Hylobius abietis. Biological Control, 62 (3). pp. 173-182. ISSN 1049-9644

Harvey, Christopher D. and Griffin, Christine (2015) Local host-dependent persistence of the entomopathogenic nematode Steinernema carpocapsae used to control the large pine weevil Hylobius abietis. Biocontrol, 61 (2). pp. 185-193. ISSN 1386-6141

Harvey, Christopher D. and Griffin, Christine (2012) Host activity and wasp experience affect parasitoid wasp foraging behaviour and oviposition on nematode-infected larvae of the forestry pest Hylobius abietis. Ecological Entomology, 37. pp. 269-282. ISSN 0307-6946

Harvey, Christopher D., Williams, Christopher D., Dillon, Aoife B. and Griffin, Christine T. (2016) Inundative pest control: How risky is it? A case study using entomopathogenic nematodes in a forest ecosystem. Forest Ecology and Management, 380. pp. 242-251. ISSN 0378-1127

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