Tyrrell, C., Burgess, C. M., Brennan, F. P., Münzenmaier, D., Drissner, D., Leigh, R. J. and Walsh, Fiona (2025) Genomic analysis of antimicrobial resistant Escherichia coli isolated from manure and manured agricultural grasslands. npj Antimicrobials and Resistance, 3 (1). ISSN 2731-8745
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Abstract
Antimicrobial resistance (AMR) is a multifactorial issue involving an intertwining relationship between
animals, humans and the environment. The environment can harbour Escherichia coli that are
pathogenic or commensal. Escherichia coli is used as an indicator of environmental faecal
contamination. Through culture dependent approaches this study identified 46 E. coli isolates in
porcine and bovine manure, non-manured and manured soil, and manured grass. The grass isolation
highlights grass as an environmental reservoir for E. coli. We also identified a diverse plasmidome with
23 different plasmid replicon types. The E. coli isolates were phenotypically antimicrobial resistant,
predominantly multidrug resistant. Whole genome sequencing identified 31 antimicrobial resistance
genes, and mutations in the gyrA, parC, and parE genes, conferring fluoroquinolone resistance. This
study demonstrates grass as an understudied environmental niche of AMR E. coli, which directly links
the environment to the grass grazing animal and vice-versa via the circular economy of manure
application.
| Item Type: | Article |
|---|---|
| Keywords: | Genomic analysis; antimicrobial resistant; Escherichia coli; manure and manured; agricultural; grasslands |
| Academic Unit: | Faculty of Science and Engineering > Biology |
| Item ID: | 21154 |
| Identification Number: | 10.1038/s44259-025-00081-8 |
| Depositing User: | Fiona Walsh |
| Date Deposited: | 03 Feb 2026 11:56 |
| Journal or Publication Title: | npj Antimicrobials and Resistance |
| Publisher: | Nature Research |
| Refereed: | Yes |
| Related URLs: | |
| Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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