2015

Cluxton, Christopher, Caffrey, Brian E., Kinsella, Gemma K., Moynagh, Paul N., Fares, Mario A. and Fallon, Padraic G. (2015) Functional conservation of an ancestral Pellino protein in helminth species. Scientific Reports, 5 (11687). ISSN 2045-2322

2014

Keane, Orla M., Toft, Christina, Carretero-Paulet, Lorenzo, Jones, Gary W. and Fares, Mario A. (2014) Preservation of Genetic and Regulatory Robustness in Ancient Gene Duplicates of Saccharomyces cerevisiae. Genome Research, 14. pp. 1-29. ISSN 1088-9051

2013

Fares, Mario A., Keane, Orla M., Toft, Christina, Carretero-Paulet, Lorenzo and Jones, Gary W. (2013) The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes. PLos Genetics, 9 (1). e1003176. ISSN 1553-7390

2009

Reardon, Wesley, Fitzpatrick, David A., Fares, Mario A. and Nugent, Jacqueline M. (2009) Evolution of flower shape in Plantago lanceolata. Plant Molecular Biology, 71 (3). pp. 241-250. ISSN 0167-4412

2008

Codoñer, Francisco M., O'Dea, Shirley and Fares, Mario A. (2008) Reducing the false positive rate in the non-parametric analysis of molecular coevolution. BMC Evolutionary Biology, 8 (106). ISSN 1471-2148

2004

Lynn, David J., Higgs, Rowan, Gaines, Susan, Tierney, Joanna, James, Tharappel, Lloyd, Andrew T., Fares, Mario A., Mulcahy, Grace and O'Farrelly, Cliona (2004) Bioinformatic discovery and initial characterisation of nine novel antimicrobial peptide genes in the chicken. Immunogenetics, 56 (3). pp. 170-176.

Lynn, David J., Lloyd, Andrew T., Fares, Mario A. and O'Farrelly, Cliona (2004) Evidence of Positively Selected Sites in Mammalian a-Defensins. Molecular Biology and Evolution, 21 (5). pp. 819-827.

Fares, Mario A. (2004) SWAPSC: sliding window analysis procedure to detect selective constraints. Bioinformatics, 20 (16). pp. 2867-2868.