Cluxton, Christopher, Caffrey, Brian E., Kinsella, Gemma K., Moynagh, Paul N., Fares, Mario A. and Fallon, Padraic G. (2015) Functional conservation of an ancestral Pellino protein in helminth species. Scientific Reports, 5 (11687). ISSN 2045-2322
Keane, Orla M., Toft, Christina, Carretero-Paulet, Lorenzo, Jones, Gary W. and Fares, Mario A. (2014) Preservation of Genetic and Regulatory Robustness in Ancient Gene Duplicates of Saccharomyces cerevisiae. Genome Research, 14. pp. 1-29. ISSN 1088-9051
Fares, Mario A., Keane, Orla M., Toft, Christina, Carretero-Paulet, Lorenzo and Jones, Gary W. (2013) The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes. PLos Genetics, 9 (1). e1003176. ISSN 1553-7390
Reardon, Wesley, Fitzpatrick, David A., Fares, Mario A. and Nugent, Jacqueline M. (2009) Evolution of flower shape in Plantago lanceolata. Plant Molecular Biology, 71 (3). pp. 241-250. ISSN 0167-4412
CodoƱer, Francisco M., O'Dea, Shirley and Fares, Mario A. (2008) Reducing the false positive rate in the non-parametric analysis of molecular coevolution. BMC Evolutionary Biology, 8 (106). ISSN 1471-2148
Lynn, David J., Higgs, Rowan, Gaines, Susan, Tierney, Joanna, James, Tharappel, Lloyd, Andrew T., Fares, Mario A., Mulcahy, Grace and O'Farrelly, Cliona (2004) Bioinformatic discovery and initial characterisation of nine novel antimicrobial peptide genes in the chicken. Immunogenetics, 56 (3). pp. 170-176.
Lynn, David J., Lloyd, Andrew T., Fares, Mario A. and O'Farrelly, Cliona (2004) Evidence of Positively Selected Sites in Mammalian a-Defensins. Molecular Biology and Evolution, 21 (5). pp. 819-827.
Fares, Mario A. (2004) SWAPSC: sliding window analysis procedure to detect selective constraints. Bioinformatics, 20 (16). pp. 2867-2868.