Do, Thi Thuy, Smyth, Cian, Crispie, Fiona, Burgess, Catherine, Brennan, Fiona and Walsh, Fiona (2023) Comparison of soil and grass microbiomes and resistomes reveals grass as a greater antimicrobial resistance reservoir than soil. Science of The Total Environment, 857. p. 159179. ISSN 0048-9697
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Abstract
Grasslands cover a large proportion of global agricultural landmass used to feed herbivores and ruminants and link the
environment to the food chain via animals onto humans. However, most scientific studies of antimicrobial resistance
and microbiomes at the environmental – animal nexus have focused on soil or vegetables rather than grasslands. Based
on previous microbiome phyllosphere-soil studies we hypothesised that the microbiome and resistomes across soil and
grass would have a core of shared taxa and antimicrobial resistance genes (ARGs), but that in addition each would also
have a minority of unique signatures. Our data indicated grass contained a wider variety and higher relative abundance of ARGs and mobile genetic elements (MGEs) than soil with or without slurry amendments. The microbiomes
of soil and grass were similar in content but varied in the composition proportionality. While there were commonalities
across many of the ARGs present in soil and on grass their correlations with MGEs and bacteria differed, suggesting a
source other than soil is also relevant for the resistome of grass. The variations in the relative abundances of ARGs in
soil and on grass also indicated that either the MGEs or the bacteria carrying the ARGs comprised a higher relative
abundance on grass than in soil. We conclude that while soil may be a source of some of these genes it cannot be
the source for all ARGs and MGEs. Our data identifies grass as a more diverse and abundant reservoir of ARGs and
MGEs in the environment than soil, which is significant to human and animal health when viewed in the context of
grazing food animals.
Item Type: | Article |
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Keywords: | Phyllosphere; Bacterial communities; Soil; Antimicrobial resistance; |
Academic Unit: | Faculty of Science and Engineering > Biology Faculty of Science and Engineering > Research Institutes > Human Health Institute |
Item ID: | 19102 |
Identification Number: | 10.1016/j.scitotenv.2022.159179 |
Depositing User: | Fiona Walsh |
Date Deposited: | 24 Oct 2024 14:14 |
Journal or Publication Title: | Science of The Total Environment |
Publisher: | Elsevier |
Refereed: | Yes |
Related URLs: | |
URI: | https://mural.maynoothuniversity.ie/id/eprint/19102 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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