Article

O’Dwyer, Kevin, Domijan, Katarina, Dignam, Adam, Butler, Marion and Hennelly, Bryan M. (2021) Automated Raman Micro-Spectroscopy of Epithelial Cell Nuclei for High-Throughput Classification. Cancers, 13 (19). p. 4767. ISSN 2072-6694

Fan, Xin, Tang, Zhengyuan, O’Dwyer, Kevin and Hennelly, Bryan M. (2021) An Inexpensive Portable Self-Reference Module for Digital Holographic Microscopy. Photonics, 8 (7). p. 277. ISSN 2304-6732

Barton, Sinead and Hennelly, Bryan M. (2019) An Algorithm for the Removal of Cosmic Ray Artifacts in Spectral Data Sets. Applied Spectroscopy, 73 (8). pp. 893-901. ISSN 0003-7028

Barton, Sinead, O'Dwyer, Kevin, Butler, Marion P., Dignam, Adam, Byrne, Hugh J., O'Neill, Luke and Hennelly, Bryan M. (2019) Improved performance of near infrared excitation Raman spectroscopy using reflective thin-film gold on glass substrates for cytology samples. Analytical Methods, 11. pp. 6023-6032. ISSN 1759-9660

Fan, Xin, Healy, John J, O'Dwyer, Kevin and Hennelly, Bryan M. (2019) Label-free color staining of quantitative phase images of biological cells by simulated Rheinberg illumination. Applied Optics, 58 (12). pp. 3104-3114. ISSN 1559-128X

Barton, Sinead, Ward, Tomas E. and Hennelly, Bryan M. (2018) Algorithm for optimal denoising of Raman spectra. Analytical Methods, 10 (30). pp. 3759-3769. ISSN 1759-9660

Liu, Dongyue, Byrne, Hugh J, O'Neill, Luke and Hennelly, Bryan M. (2018) Investigation of wavenumber calibration for Raman spectroscopy using a polymer reference. Proceedings of SPIE. p. 1068027. ISSN 0277-786X

Molony, Claire, McIntyre, Jennifer, Maguire, Adrian, Hakimjavadi, Roya, Burtenshaw, Denise, Casey, Gillian, Luca, Mariana Di, Hennelly, Bryan M., Byrne, Hugh J. and Cahill, Paul A. (2018) Label-free discrimination analysis of de-differentiated vascular smooth muscle cells, mesenchymal stem cells and their vascular and osteogenic progeny using vibrational spectroscopy. BBA - Molecular Cell Research, 1865. pp. 343-353. ISSN 0167-4889

Tang, Zhengyuan, Barton, Sinead, Ward, Tomas E., Lowry, John P., Doran, Michelle M., Byrne, Hugh J. and Hennelly, Bryan M. (2018) Multicomponent analysis using a confocal Raman microscope. Applied Optics, 57 (22). ISSN 1559-128X

Tang, Zhengyuan, Barton, Sinead, Ward, Tomas E., Lowry, John P., Doran, Michelle M., Byrne, Hugh J. and Hennelly, Bryan M. (2018) Quantifying the concentration of glucose, urea, and lactic acid in aqueous mixtures by confocal Raman microscopy. Proceedings of SPIE, 10685. 106850V. ISSN 0277-786X

Hennelly, Bryan M. and Kerr, L. T. (2016) A multivariate statistical investigation of background subtraction algorithms for Raman spectra of cytology samples recorded on glass slides. Chemometrics and Intelligent Laboratory Systems, 158. pp. 61-68. ISSN 0169-7439

Kerr, Laura, Byrne, Hugh J. and Hennelly, Bryan M. (2015) Optimal choice of sample substrate and laser wavelength for Raman spectroscopic analysis of biological specimen. Analytical Methods, 7. pp. 5041-5052. ISSN 1759-9660

Liu, Shi, Hennelly, Bryan M., Guo, Changliang and Sheridan, John T. (2015) Robustness of Double Random Phase Encoding spread-space spread-spectrum watermarking technique. Signal Processing, 109. pp. 345-361. ISSN 0165-1684

Maycock, Jonathan, Hennelly, Bryan M. and McDonald, John (2015) Single-shot speckle reduction in numerical reconstruction of digitally recorded holograms : Comment. Optics Letters, 40 (17). p. 3953. ISSN 0146-9592

Kerr, Laura, Domijan, Katarina, Cullen, Ivor and Hennelly, Bryan M. (2014) Applications of Raman spectroscopy to the urinary bladder for cancer diagnostics. Photonics and Lasers in Medicine, 3 (3). pp. 193-224. ISSN 2193-0643

Kujawinska, Malgorzata, Kozacki, Tomasz, Falldorf, Claas, Meeser, Thomas, Hennelly, Bryan M., Garbat, Piotr, Zaperty, Weronica, Niemelä, Mikko, Finke, Grzegorz, Kowiel, Marcin and Naughton, Thomas J. (2014) Multiwavefront digital holographic television. Optics Express, 22 (3). pp. 2324-2336. ISSN 1094-4087

Maycock, Jonathan, McDonald, John and Hennelly, Bryan M. (2013) Speckle reduction of reconstructions of digital holograms using three dimensional filtering. Optics Communications, 300. pp. 142-155. ISSN 0030-4018

Liu, Shi, Hennelly, Bryan M. and Sheridan, John T. (2012) Digital image watermarking spread-space spread-spectrum technique based on Double Random Phase Encoding. Proceedings of SPIE, 8498. pp. 1-11. ISSN 0277-786X

Kozacki, Tomasz, Kujawinska, Malgorzata, Finke, Grzegorz and Hennelly, Bryan M. (2012) Extended viewing angle holographic display system with tilted SLMs in a circular configuration. Applied Optics, 51 (11). pp. 1771-1780. ISSN 1559-128X

Kozacki, Tomasz, Kujawinska, Malgorzata, Finke, Grzegorz, Zaperty, Weronica and Hennelly, Bryan M. (2012) Holographic Capture and Display Systems in Circular Configurations. Journal of Display Technology, 8 (4). pp. 225-232. ISSN 1551-319X

Kujawinska, Malgorzata, Finke, Grzegorz, Garbat, Piotr, Faldorf, Claas and Hennelly, Bryan M. (2012) Wide angle digital holographic interferometry with real-time optical reconstruction. Photonics Letters of Poland, 4 (2). pp. 48-50. ISSN 2080-2242

Liu, Chenggeng, Wang, Dayong, Healy, J.J., Hennelly, Bryan M., Sheridan, John T. and Kim, Myung K. (2011) Digital computation of the complex linear canonical transform. Journal of the Optical Society of America A., 28 (7). pp. 1379-1386. ISSN 1084-7529

Pandey, Nitesh and Hennelly, Bryan M. (2011) Effect of additive noise on phase measurement in digital holographic microscopy. 3D Research, 2 (1). p. 6. ISSN 2092-6731

Kelly, D.P., Healy, J.J., Hennelly, Bryan M. and Sheridan, J. T. (2011) Quantifying the 2.5D imaging performance of digital holographic systems. Journal of the European Optical Society, 6 (11034). pp. 1-14. ISSN 1990-2573

Pandey, Nitesh and Hennelly, Bryan M. (2011) Quantization noise and its reduction in lensless Fourier digital holography. Applied Optics, 50 (7). B58-B70. ISSN 0003-6935

Kelly, Damien P., Monaghan, David S., Pandey, Nitesh, Kozacki, Tomasz, Michalkiewicz, Aneta, Finke, Grzegorz, Hennelly, Bryan M. and Kujawinska, Malgorzata (2010) Digital Holographic Capture and Optoelectronic Reconstruction for 3D Displays. International Journal of Digital Multimedia Broadcasting, 2010 (759323). pp. 1-14. ISSN 1687-7578

Pandey, Nitesh and Hennelly, Bryan M. (2010) Fixed-point numercial-reconstruction for digital holographic microscopy. Optics Letters, 35 (7). pp. 1076-1078. ISSN 0146-9592

Molony, Karen M., Hennelly, Bryan M., Kelly, Damien P. and Naughton, Thomas J. (2010) Reconstruction algorithms applied to in-line Gabor digital holographic microscopy. Optics Communications, 283. pp. 903-909. ISSN 0030-4018

Hennelly, Bryan M., Kelly, Damien, Pandey, Nitesh and Monaghan, David (2010) Zooming Algorithms for Digital Holography. Journal of Physics: Conference Series :, 206 (012027). pp. 1-2. ISSN 1742-6588

Monaghan, David S., Kelly, Damien P., Pandey, Nitesh and Hennelly, Bryan M. (2009) Twin removal in digital holography using diffuse illumination. Optics Letters, 34 (23). pp. 3610-3612. ISSN 0146-9592

Pandey, Nitesh, Hennelly, Bryan M., Kelly, Damien P. and Naughton, Thomas J. (2009) Speed up of Fresnel transforms for Digital holography using pre-computation. Proceedings of the China-Ireland Information and Communications Technology Conference (CIICT 2009). ISBN 9780901519672. pp. 234-236.

Kelly, Damien P., Pandey, Nitesh, Hennelly, Bryan M. and Naughton, Thomas J. (2009) Quantization noise: An additional constraint for the extended sampling theorem. OpticsInfoBase.

Ahrenberg, Lukas, Page, Andrew J., Hennelly, Bryan M. and McDonald, John (2009) Using Commodity Graphics Hardware for Real-Time Digital Hologram View-Reconstruction. Journal of Display Technology, 5 (4). pp. 111-119. ISSN 1551-319X

Ward, Jennifer E., Kelly, Damien P., Hennelly, Bryan M. and Sheridan, John T. (2009) Comment on the paper: H.-E. Hwang, P. Han, Theoretical analysis for surface tilt and translation detection based on speckle photography in the Fresnel domain, Opt. Commun. 282 (2009) 351–354. Optics Communications, 282. pp. 4358-4360. ISSN 0030-4018

Fu, Yu, Pedrini, Giancarlo, Hennelly, Bryan M., Groves, Roger M. and Osten, Wolfgang (2009) Dual-wavelength image-plane digital holography for dynamic measurement. Optics and Lasers in Engineering, 47. pp. 552-557. ISSN 0143-8166

Kelly, Damien P., Hennelly, Bryan M., Pandey, Nitesh, Naughton, Thomas J. and Rhodes, William T. (2009) Resolution limits in practical digital holographic systems. Optical Engineering, 48 (095801). pp. 1-13. ISSN 0091-3286

Pandey, Nitesh, Hennelly, Bryan M., Kelly, Damien P. and Naughton, Thomas J. (2009) Speed up of Fresnel transforms for Digital holography using pre-computed chirp and GPU processing. SPIE Proceedings, 7442.

McElhinney, Conor P., Hennelly, Bryan M., Ahrenberg, Lukas and Naughton, Thomas J. (2008) Removing the twin image in digital holography by segmented filtering of in-focus twin image. Optics & Photonics for Information Processing, 7072. pp. 707208-1.

Kelly, D.P., Hennelly, Bryan M., McElhinney, Conor P. and Naughton, Thomas J. (2008) A Practical Guide to Digital Holography and Generalized Sampling. Proceedings of SPIE, 7072. 707215.1-707215.11. ISSN 0277-786X

Gopinathan, Unnikrishnan, Monaghan, David S., Hennelly, Bryan M., McElhinney, Conor P., Kelly, Damien P., McDonald, John, Naughton, Thomas J. and Sheridan, John T. (2008) A Projection System for Real World Three-Dimensional Objects Using Spatial Light Modulators. Journal of Display Technology, 4 (2). pp. 254-261. ISSN 1551-319X

Healy, J.J., Hennelly, Bryan M. and Sheridan, John T. (2008) Additional sampling criterion for the linear canonical transform. Optics Letters, 33 (22). pp. 2599-2601. ISSN 0146-9592

Molony, Karen M., Maycock, Jonathan, McDonald, John B, Hennelly, Bryan M. and Naughton, Thomas J. (2008) A Comparison of Wavelet Analysis Techniques in Digital Holograms. Proceedings of SPIE - The International Society for Optical Engineering 6994, 6994.

McElhinney, Conor P., Hennelly, Bryan M. and Naughton, Thomas J. (2008) Extended focused imaging for digital holograms of macroscopic three-dimensional objects. Applied Optics, 47 (19). D71-D79. ISSN 0003-6935

McElhinney, Conor P., Hennelly, Bryan M. and Naughton, Thomas J. (2008) Focused image creation approaches for macroscopic objects encoded in digital holograms. Proceedings of SPIE, 6994. 69940U. ISSN 0277-786X

Naughton, Thomas J., Hennelly, Bryan M. and Dowling, Tom (2008) Introducing secure modes of operation for optical encryption. Journal of the the Optical Society of America A, 25 (10). pp. 2608-2617. ISSN 1084-7529

Kelly, Damien P., Hennelly, Bryan M., Grun, Alexander and Unterrainer, Karl (2008) Numerical sampling rules for paraxial regime pulse diffraction calculations. Journal of the Optical Society of America A., 25. pp. 2299-2308. ISSN 1084-7529

McElhinney, Conor P., Hennelly, Bryan M. and Naughton, Thomas J. (2008) Twin-image Reduction in Inline Digital Holography using an Object Segmentation Heuristic. Journal of Physics: Conference Series, 139 (1). 012014-1-012014-5. ISSN 1742-6588

Maycock, Jonathan, Hennelly, Bryan M., McDonald, John, Frauel, Yann, Castro, Albertina, Javidi, Bahram and Naughton, Thomas J. (2007) Reduction of speckle in digital holography by discrete Fourier filtering. Journal of the Optical Society of America, 24 (6). pp. 1617-1622. ISSN 1084-7529

Hennelly, Bryan M., Naughton, Thomas J., McDonald, John, Sheridan, J. T., Unnikrishnan, G., Kelly, D.P. and Javidi, B. (2007) Spread-space spread-spectrum technique for secure multiplexing. Optics Letters, 32 (9). pp. 1060-1062. ISSN 0146-9592

Kelly, Damien P., Hennelly, Bryan M., Sheridan, John T. and Rhodes, William T. (2006) Finite-aperture effects for Fourier transform systems with convergent illumination. Part II: 3-D system analysis. Optics Communications, 263. pp. 180-188. ISSN 0030-4018

Kelly, Damien P., Ward, Jennifer E., Gopinathan, Unnikrishnan, Hennelly, Bryan M., O'Neill, Feidhlim T. and Sheridan, John T. (2006) Generalized Yamaguchi correlation factor for coherent quadratic phase speckle metrology systems with an aperture. Optics Letters, 31 (23). pp. 3444-3446. ISSN 0146-9592

Kelly, Damien P., Ward, Jennifer E., Hennelly, Bryan M., Gopinathan, Unnikrishnan, O'Neill, Feidhlim T. and Sheridan, J. T. (2006) Paraxial speckle-based metrology systems with an aperture. Journal of the Optical Society of America A., 23 (11). pp. 2861-2870. ISSN 1084-7529

Maycock, Jonathan, McElhinney, Conor P., Hennelly, Bryan M., Naughton, Thomas J., McDonald, John and Javidi, Bahram (2006) Reconstruction of partially occluded objects encoded in three-dimensional scenes by using digital holograms. Applied Optics, 45 (13). pp. 2975-2985. ISSN 0003-6935

Patten, Robert F., Hennelly, Bryan M., Kelly, Damien P., O'Neill, Feidhlim T., Liu, Ying and Sheridan, John T. (2006) Speckle photography: mixed domain fractional Fourier motion detection. Optics Letters, 31 (1). pp. 32-34. ISSN 0146-9592

Hennelly, Bryan M. and Sheridan, John T. (2005) Fast numerical algorithm for the linear canonical transform. Journal of the Optical Society of America A., 22 (5). pp. 928-937. ISSN 1084-7529

Hennelly, Bryan M. and Sheridan, John T. (2005) Generalizing, optimizing, and inventing numerical algorithms for the fractional Fourier, Fresnel, and linear canonical transforms. Journal of the Optical Society of America A., 22 (5). pp. 917-927. ISSN 1084-7529

Kelly, Damien P., Hennelly, Bryan M. and Sheridan, John T. (2005) Magnitude and direction of motion with speckle correlation and the optical fractional Fourier transform. Applied Optics, 44 (14). pp. 2720-2727. ISSN 0003-6935

Hennelly, Bryan M. and Sheridan, J. T. (2005) Optical encryption and the space bandwidth product. Optics Communications, 247. pp. 291-305. ISSN 0030-4018

Hennelly, Bryan M., Kelly, Damien P. and Sheridan, John T. (2004) Wavelength-controlled variable-order optical fractional Fourier transform. Optics Letters, 29 (5). pp. 427-429. ISSN 0146-9592

Hennelly, Bryan M. and Sheridan, J. T. (2003) Fractional Fourier transform-based image encryption: phase retrieval algorithm. Optics Communications, 226. pp. 61-80. ISSN 0030-4018

Hennelly, Bryan M. and Sheridan, J. T. (2003) Image encryption and the fractional Fourier transform. Optik, 114 (6). pp. 251-265. ISSN 0030-4026

Sheridan, John T., Hennelly, Bryan M. and Kelly, Damien P. (2003) Motion detection, the Wigner distribution function, and the optical fractional Fourier transform. Optics Letters, 28 (11). pp. 884-886. ISSN 0146-9592

Hennelly, Bryan M. and Sheridan, John T. (2003) Optical image encryption by random shifting in fractional Fourier domains. Optics Letters, 28 (4). pp. 269-271. ISSN 0146-9592

Book Section

Kelly, Damien P., Monaghan, David S., Pandey, Nitesh and Hennelly, Bryan M. (2009) Fresnel and Fourier digital holography architectures: a comparison. In: Fringe 2009, 6th International Workshop on Advanced Optical Metrology. Springer , Heidelberg ; New York, pp. 304-308. ISBN 9783642030505

Hennelly, Bryan M., Kelly, Damien P., Pandey, Nitesh and Monaghan, David S. (2009) Review of Twin Reduction and Twin Removal Techniques in Holography. In: CIICT 2009 : proceedings of the China-Ireland information and communications technologies conference. National University of Ireland Maynooth, Ireland, pp. 241-245. ISBN 9780901519672

Monaghan, David S., Kelly, Damien P., Pandey, Nitesh and Hennelly, Bryan M. (2009) Twin suppression in digital holography by means of speckle reduction. In: CIICT 2009 : proceedings of the China-Ireland information and communications technologies conference. National University of Ireland Maynooth, Ireland, pp. 237-240. ISBN 9780901519672

Hennelly, Bryan M., Naughton, Thomas J. and McDonald, John (2007) Digital Holographic Superresolution by Rotating the Object Wavefield. In: B. M. Hennelly, T. J. Naughton, and J. McAdaptive Optics: Analysis and Methods/Computational Optical Sensing and Imaging/Information Photonics/Signal Recovery and Synthesis Topical Meetings on CD-ROM. Optical Society of America, DTuD5. ISBN 1557528381

Maycock, Jonathan, Hennelly, Bryan M., McDonald, John, Frauel, Yann, Castro, Albertina, Javidi, Bahram and Naughton, Thomas J. (2007) Speckle Reduction Using the Discrete Fourier Filtering Technique. In: IMVIP 2007. International Machine Vision and Image Processing Conference, 2007. IEEE, p. 201. ISBN 0769528872

McElhinney, Conor P., Maycock, Jonathan, Hennelly, Bryan M., Naughton, Thomas J., McDonald, John and Javidi, Bahram (2006) Extraction and reconstruction of shape information from a digital hologram of three-dimensional objects. In: IMVIP 2006 : Proceedings of the Irish Machine Vision and Image Processing Conference 2006. Vision System Group, DCU, pp. 76-83. ISBN 9780955388507

Monaghan, David S., Gopinathan, Unnikrishnan, Hennelly, Bryan M., Kelly, Damien P., Naughton, Thomas J. and Sheridan, J. T. (2005) Applications of Spatial Light Modulators in Optical Signal Processing Systems. In: Proceedings of SPIE: Opto-Ireland 2005: Photonic Engineering, 358. SPIE Press.

Maycock, Jonathan, McElhinney, Conor P., Shortt, Alison, Naughton, Thomas J., McDonald, John, Hennelly, Bryan M., Gopinathan, Unnikrishnan, Monaghan, David S., Sheridan, John T. and Javidi, Bahram (2005) Holographic image processing of three-dimensional objects. In: Three-Dimensional TV, Video, and Display IV, Proceedings of SPIE 6016. SPIE Press.

Conference or Workshop Item

Naughton, Thomas J., Falldorf, Claas, Onural, Levent, Ferraro, Pietro, Depeursinge, Christian, Krueger, Sven, Emery, Yves, Hennelly, Bryan M. and Kujawiñska, Małgorzata (2011) 3D capture, processing, display, and perception with digital holography: results from a European-funded project. In: Digital Holography and Three-Dimensional Imaging, May 2011, Japan.