Article

Upton, Maeve, Parnell, Andrew, Kemp, Andrew, Ashe, Erica, McCarthy, Gerard and Cahill, Niamh (2024) A noisy-input generalized additive model for relative sea-level change along the Atlantic coast of North America. Journal of the Royal Statistical Society Series C: Applied Statistics. ISSN 0035-9254

Healy, Dáire, Tawn, Jonathan, Thorne, Peter and Parnell, Andrew (2024) Inference for extreme spatial temperature events in a changing climate with application to Ireland. Journal of the Royal Statistical Society Series C: Applied Statistics. ISSN 0035-9254

Nejad, Amin Shoari, Alaiz-Rodríguez, Rocío, McCarthy, Gerard D., Kelleher, Brian, Grey, Anthony and Parnell, Andrew (2024) SERT: A transformer based model for multivariate temporal sensor data with missing values for environmental monitoring. Computers & Geosciences, 188. p. 105601. ISSN 00983004

Shoari Nejad, Amin, McCarthy, Gerard D., Kelleher, Brian, Grey, Anthony and Parnell, Andrew (2024) Vector time series modelling of turbidity in Dublin Bay. Journal of Applied Statistics. pp. 1-16. ISSN 0266-4763

Cahill, Niamh, Croke, Jacky, Campbell, Micheline, Hughes, Kate, Vitkovsky, John, Kilgallen, Jack Eaton and Parnell, Andrew (2023) A Bayesian time series model for reconstructing hydroclimate from multiple proxies. Environmetrics, 34 (4). ISSN 1180-4009

McJames, Nathan, Parnell, Andrew and O’Shea, Ann (2023) Factors affecting teacher job satisfaction: a causal inference machine learning approach using data from TALIS 2018. Educational Review. pp. 1-25. ISSN 0013-1911

Gibbons, Anthony, Donohue, Ian, Gorman, Courtney, King, Emma and Parnell, Andrew (2023) NEAL: an open-source tool for audio annotation. PeerJ, 11 (e15913). pp. 1-26. ISSN 2167-8359

Naz, Rehana, Zavrakli, Eleni, Parnell, Andrew, Malone, David, Duffy, Ken and Dey, Subhrakanti (2023) Optimal age-specific vaccination control for COVID-19: An Irish case study. PLOS ONE, 18 (9). e0290974. ISSN 1932-6203

Inglis, Alan, Parnell, Andrew and Hurley, Catherine (2023) vivid: An R package for Variable Importance and Variable Interactions Displays for Machine Learning Models. The R Journal, 15 (2). pp. 344-361. ISSN 2073-4859

Shoari Nejad, Amin, Parnell, Andrew, Greene, Alice, Thorne, Peter, Kelleher, Brian P., Devoy, Robert J. N. and McCarthy, Gerard (2022) A newly reconciled dataset for identifying sea level rise and variability in Dublin Bay. Ocean Science, 18 (2). pp. 511-522. ISSN 1812-0792

Mimnagh, Niamh, Parnell, Andrew, Prado, Estevão and Moral, Rafael de Andrade (2022) Bayesian multi-species N-mixture models for unmarked animal communities. Environmental and Ecological Statistics, 29 (4). pp. 755-778. ISSN 1352-8505

Mc Ardle, Angela, Kwasnik, Anna, Szentpetery, Agnes, Hernandez, Belinda, Parnell, Andrew, de Jager, Wilco, de Roock, Sytze, FitzGerald, Oliver and Pennington, Stephen R. (2022) Identification and Evaluation of Serum Protein Biomarkers That Differentiate Psoriatic Arthritis From Rheumatoid Arthritis. Arthritis & Rheumatology, 74 (1). pp. 81-91. ISSN 2326-5191

Paiva, Vitor Hugo Rodrigues, Ballutaud, Marine, Travers-Trolet, Morgane, Marchal, Paul, Dubois, Stanislas F., Giraldo, Carolina, Parnell, Andrew, Nuche-Pascual, M. Teresa and Lefebvre, Sébastien (2022) Inferences to estimate consumer’s diet using stable isotopes: Insights from a dynamic mixing model. PLoS ONE, 17 (2). pp. 1-26. ISSN 1932-6203

DeFelipe, Irene, Alcalde, Juan, Baykiev, Eldar, Bernal, Isabel, Boonma, Kittiphon, Carbonell, Ramon, Flude, Stephanie, Folch, Arnau, Fullea, Javier, García-Castellanos, Daniel, Geyer, Adelina, Giralt, Santiago, Hernández, Armand, Jiménez-Munt, Ivone, Kumar, Ajay, Llorens, Maria-Gema, Martí, Joan, Molina, Cecilia, Olivar-Castaño, Andrés, Parnell, Andrew, Schimmel, Martin, Torné, Montserrat and Ventosa, Sergi (2022) Towards a Digital Twin of the Earth System: Geo-Soft-CoRe, a Geoscientific Software & Code Repository. Frontiers in Earth Science, 10 (828005). pp. 1-20. ISSN 2296-6463

Tu, Yuhui, Liu, Zhongzhou, Carneiro, Luiz, Ryan, Caitriona M., Parnell, Andrew, Leen, Seán B and Harrison, Noel M (2022) Towards an instant structure-property prediction quality control tool for additive manufactured steel using a crystal plasticity trained deep learning surrogate. Materials & Design, 213. p. 110345. ISSN 02641275

Inglis, Alan, Parnell, Andrew and Hurley, Catherine B. (2022) Visualizing Variable Importance and Variable Interaction Effects in Machine Learning Models. Journal of Computational and Graphical Statistics. pp. 1-13. ISSN 1061-8600

Doyle, Aoife C., Egan, Darragh S., Ryan, Caitríona M., Parnell, Andrew and Dowling, Denis P. (2021) Application of the STRAY statistical learning algorithm for the evaluation of in-situ process monitoring data during L-PBF additive manufacturing. Procedia Manufacturing, 54. pp. 250-256. ISSN 2351-9789

Prado, Estevão B., de Andrade Moral, Rafael and Parnell, Andrew (2021) Bayesian additive regression trees with model trees. Statistics and Computing, 31 (3). ISSN 0960-3174

Rafter, Pierce, Gormley, Isobel Claire, Parnell, Andrew, Naderi, Saeid and Berry, Donagh P. (2021) The Contribution of Copy Number Variants and Single Nucleotide Polymorphisms to the Additive Genetic Variance of Carcass Traits in Cattle. Frontiers in Genetics, 12. ISSN 1664-8021

Djamali, Morteza, Rashidian, Elnaz, Askari‐Chaverdi, Alireza, Aubert, Cyril, Brisset, Elodie, Demory, François, Faucherre, Nicolas, Gandouin, Emmanuel, Lahijani, Hamid, Marriner, Nick, Naderi‐Beni, Abdolmajid and Parnell, Andrew (2021) Early Sasanian landscape modification: New geoarchaeological evidence from the Ardashir Pond in southwest Iran (Palace of Ardashir, third century CE). Geoarchaeology, 36 (6). pp. 925-942. ISSN 0883-6353

Slonim, Donna K., Tewari, Prerna, Kashdan, Eugene, Walsh, Cathal, Martin, Cara M., Parnell, Andrew and O’Leary, John J. (2021) Estimating the conditional probability of developing human papilloma virus related oropharyngeal cancer by combining machine learning and inverse Bayesian modelling. PLOS Computational Biology, 17 (8). e1009289. ISSN 1553-7358

Dempsey, Rebecca, Parnell, Andrew, McCarron, Pádraig and McCarthy, Gerard (2021) Excess Mortality in Dublin during the Covid-19 Pandemic: Using RIP.ie as a geographical source. Irish Geography, 53 (2). ISSN 0075-0778

Egan, Sonja, Kearney, Clodagh M., Brama, Pieter A.J., Parnell, Andrew and McGrath, Denise (2021) Exploring stable-based behaviour and behaviour switching for the detection of bilateral pain in equines. Applied Animal Behaviour Science, 235. p. 105214. ISSN 0168-1591

Kemp, Andrew C., Vane, Christopher H., Kim, Alexander W., Dutton, Christopher L., Subalusky, Amanda L., Kemp, Stuart K. and Parnell, Andrew (2021) Fecal steroids as a potential tool for conservation paleobiology in East Africa. Biodiversity and Conservation. ISSN 0960-3115

Rafter, Pierce, Gormley, Isobel Claire, Purfield, Deirdre, Parnell, Andrew, Naderi, Saeid and Berry, Donagh P. (2021) Genome-wide association analyses of carcass traits using copy number variants and raw intensity values of single nucleotide polymorphisms in cattle. BMC Genomics, 22 (1). ISSN 1471-2164

Haslett, John, Parnell, Andrew, Hinde, John and de Andrade Moral, Rafael (2021) Modelling Excess Zeros in Count Data: A New Perspective on Modelling Approaches. International Statistical Revie. ISSN 0306-7734

Christie, Margaret, Bernhardt, Christopher, Parnell, Andrew, Shaw, Timothy, Khan, Nicole, Corbett, D., García-Artola, Ane, Clear, Jennifer, Walker, Jennifer, Donnelly, Jeffrey, Hasse, Tobias and Horton, Benjamin (2021) Pollen Geochronology from the Atlantic Coast of the United States during the Last 500 Years. Water, 13 (3). p. 362. ISSN 2073-4441

Christie, Margaret, Bernhardt, Christopher, Parnell, Andrew, Shaw, Timothy, Khan, Nicole, Corbett, D., García-Artola, Ane, Clear, Jennifer, Walker, Jennifer, Donnelly, Jeffrey, Hasse, Tobias and Horton, Benjamin (2021) Pollen Geochronology from the Atlantic Coast of the United States during the Last 500 Years. Water, 13 (362). pp. 1-37. ISSN 2073-4441

Egan, Darragh S., Ryan, Caitríona M., Parnell, Andrew and Dowling, Denis P. (2021) Using in-situ process monitoring data to identify defective layers in Ti-6Al-4V additively manufactured porous biomaterials. Journal of Manufacturing Processes, 64. pp. 1248-1254. ISSN 15266125

Byrne, Andrew W., Parnell, Andrew, O’Keeffe, James and Madden, Jamie M. (2021) The challenge of estimating wildlife populations at scale: the case of the European badger (Meles meles) in Ireland. European Journal of Wildlife Research, 67 (5). ISSN 1612-4642

Croke, Jacky, Vítkovský, John, Hughes, Kate, Campbell, Micheline, Amirnezhad-Mozhdehi, Sahar, Parnell, Andrew, Cahill, Niamh and Dalla Pozza, Ramona (2021) A palaeoclimate proxy database for water security planning in Queensland Australia. Scientific Data, 8 (1). ISSN 2052-4463

McCarthy, Gerard, Dempsey, Rebecca, Parnell, Andrew and MacCarron, Pádraig (2020) Just a 'bad flu'? How death notices debunk that Covid-19 myth. RTE news Brainstorm 28/09/2020.

Hernández, Armand, Sánchez-López, Guiomar, Pla-Rabes, Sergi, Comas-Bru, Laia, Parnell, Andrew, Cahill, Niamh, Geyer, Adelina, Trigo, Ricardo M and Giralt, Santiago (2020) A 2,000‑year Bayesian NAO reconstruction from the Iberian Peninsula. Scientific Reports, 10 (14961). ISSN 2045-2322

Rafter, Pierce, Gormley, Isobel Claire, Parnell, Andrew, Kearney, John Francis and Berry, Donagh P. (2020) Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle. BMC Genomics, 21 (1). ISSN 1471-2164

Prado, Estevão B., O'Neill, Eoghan, Hernandez, Belinda, Parnell, Andrew and de Andrade Moral, Rafael (2020) Discussion of: "Bayesian Regression Tree Models for Causal Inference: Regularization, Confounding, and Heterogeneous Effects". Bayesian Analysis, 15 (3). pp. 1029-1031. ISSN 1931-6690

Kadye, Wilbert T., Redelinghuys, Suzanne, Parnell, Andrew and Booth, Anthony J. (2020) Exploring source differences on diet-tissue discrimination factors in the analysis of stable isotope mixing models. Scientific Reports, 10 (1). ISSN 2045-2322

Wundervald, Bruna, Parnell, Andrew and Domijan, Katarina (2020) Generalizing Gain Penalization for Feature Selection in Tree-Based Models. IEEE Access, 8. pp. 190231-190239. ISSN 2169-3536

Alaiz-Rodriguez, Rocio and Parnell, Andrew (2020) A Machine Learning Approach for Lamb Meat Quality Assessment Using FTIR Spectra. IEEE Access, 8. pp. 52385-52394. ISSN 2169-3536

Parnell, Andrew, González-Castro, Víctor, Alaiz-Rodríguez, Rocío and Barrientos, Gonzalo Molpeceres (2020) Machine Learning Techniques for the Detection of Inappropriate Erotic Content in Text. International Journal of Computational Intelligence Systems, 13 (1). p. 591. ISSN 1875-6883

Hernández, Armand, Martin-Puertas, Celia, Moffa-Sánchez, Paola, Moreno-Chamarro, Eduardo, Ortega, Pablo, Blockley, Simon, Cobb, Kim M., Comas-Bru, Laia, Giralt, Santiago, Goosse, Hugues, Luterbacher, Jürg, Martrat, Belen, Muscheler, Raimund, Parnell, Andrew, Pla-Rabes, Sergi, Sjolte, Jesper, Scaife, Adam A., Swingedouw, Didier, Wise, Erika and Xu, Guobao (2020) Modes of climate variability: Synthesis and review of proxy-based reconstructions through the Holocene. Earth-Science Reviews, 209. p. 103286. ISSN 0012-8252

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam and Stevens, Thomas (2020) Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, north-eastern Australia. Marine Pollution Bulletin, 157. p. 111344. ISSN 0025-326X

Tai, Yew Seng, Daly, Patrick, Mckinnon, E. Edwards, Parnell, Andrew, Feener, R. Michael, Majewski, Jedrzej, Ismail, Nazli and Sieh, Kerry (2020) The impact of Ming and Qing dynasty maritime bans on trade ceramics recovered from coastal settlements in northern Sumatra, Indonesia. Archaeological Research in Asia, 21. p. 100174. ISSN 2352-2267

Alaiz-Rodríguez, Rocío and Parnell, Andrew (2020) An information theoretic approach to quantify the stability of feature selection and ranking algorithms. Knowledge-Based Systems, 195. p. 105745. ISSN 0950-7051

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam and Boyd, Sue (2019) A novel approach of combining isotopic and geochemical signatures to differentiate the sources of sediments and particulate nutrients from different land uses. Science of The Total Environment, 655. pp. 129-140. ISSN 0048-9697

Farries, G., Gough, K.F., Parnell, Andrew, McGivney, B.A., McGivney, C.L., McGettigan, P.A., MacHugh, D.E., Katz, L.M. and Hill, E.W. (2019) Analysis of genetic variation contributing to measured speed in Thoroughbreds identifies genomic regions involved in the transcriptional response to exercise. Animal Genetics, 50. pp. 670-685. ISSN 0268-9146

Daly, Patrick, Sieh, Kerry, Seng, Tai Yew, McKinnon, Edmund Edwards, Parnell, Andrew, Ardiansyah, Feener, R Michael, Ismail, Nazli, Nizamuddin and Majewski, Jedrzej (2019) Archaeological evidence that a late 14th-century tsunami devastated the coast of northern Sumatra and redirected history. Proceedings of the National Academy of Sciences, 116 (24). pp. 11679-11686. ISSN 1091-6490

O'Sullivan, John, Sweeney, Conor and Parnell, Andrew (2019) Bayesian spatial extreme value analysis of maximum temperatures in County Dublin, Ireland. Environmetrics, 31 (e2621). ISSN 1180-4009

Murray, Michelle, Soh, Wuu Kuang, Yiotis, Charilaos, Batke, Sven, Parnell, Andrew, Spicer, Robert A., Lawson, Tracy, Caballero, Rodrigo, Wright, Ian J., Purcell, Conor and McElwain, Jennifer C. (2019) Convergence in Maximum Stomatal Conductance of C3 Woody Angiosperms in Natural Ecosystems Across Bioclimatic Zones. Frontiers in Plant Science, 10 (558). ISSN 1664-462X

Soh, Wuu Kuang, Yiotis, Charilaos, Murray, Michelle, Parnell, Andrew, Wright, Ian J., Spicer, Robert A., Lawson, Tracy, Caballero, Rodrigo and McElwain, Jennifer C. (2019) Rising CO2 drives divergence in water use efficiency of evergreen and deciduous plants. Science Advances, 5 (12). ISSN 2375-2548

Ashe, Erica L., Cahill, Niamh, Hay, Carling, Khan, Nicole, Kemp, Andrew, Engelhart, Simon E., Horton, Benjamin P., Parnell, Andrew and Kopp, Robert E. (2019) Statistical modeling of rates and trends in Holocene relative sea level. Quaternary Science Reviews, 204. pp. 58-77. ISSN 0277-3791

Hill, E.W., McGivney, B.A., Rooney, M.F., Katz, L.M., Parnell, Andrew and MacHugh, D.E. (2019) The contribution of myostatin (MSTN) and additional modifying genetic loci to race distance aptitude in Thoroughbred horses racing in different geographic regions. Equine Veterinary Journal, 51 (5). pp. 625-633. ISSN 0425-1644

McGivney, B.A., Hernandez, B., Katz, L.M., MacHugh, D.E., McGovern, S.P., Parnell, Andrew, Wiencko, H.L. and Hill, E.W. (2019) A genomic prediction model for racecourse starts in the Thoroughbred horse. Animal Genetics, 50. pp. 347-357. ISSN 0268-9146

Rafter, Pierce, Purfield, Deirdre C., Berry, Donagh P., Parnell, Andrew, Gormley, I. Claire, Kearney, J. Francis, Coffey, Mike P. and Carthy, Tara R. (2018) Characterization of copy number variants in a large multibreed population of beef and dairy cattle using high-density single nucleotide polymorphism genotype data. Journal of Animal Science, 96 (10). pp. 4112-4124. ISSN 0021-8812

Howard, Emma, Meehan, Maria and Parnell, Andrew (2018) Contrasting prediction methods for early warning systems at undergraduate level. The Internet and Higher Education, 37. pp. 66-75. ISSN 1096-7516

Osman, Mugtaba, Parnell, Andrew and McCauley, MacDara (2018) Effect of the Irish Civil War 1922-1923 on suicide rates in Ireland: a retrospective investigation of the archives of the registrar general for Saorstát Éireann. Epidemiology Biostatistics and Public Health, 15 (3). e12920. ISSN 2282-0930

Duffill Telsnig, Jessica I., Jennings, Simon, Mill, Aileen C., Walker, Nicola D., Parnell, Andrew and Polunin, Nicholas V.C. (2018) Estimating contributions of pelagic and benthic pathways to consumer production in coupled marine food webs. Journal of Animal Ecology, 88 (3). pp. 405-415. ISSN 0021-8790

Wolbach, Wendy S., Ballard, Joanne P., Mayewski, Paul A., Parnell, Andrew, Cahill, Niamh, Adedeji, Victor, Bunch, Ted. E., Domínguez-Vázquez, Gabriela, Erlandson, Jon M., Firestone, Richard B., French, Timothy A., Howard, George, Israde-Alcántara, Isabel, Johnson, John R., Kimbel, David, Kinzie, Charles R., Kurbatov, Andrei, Kletetschka, Gunther, LeCompte, Malcolm A., Mahaney, William C., Melott, Adrian L., Mitra, Siddhartha, Maiorana-Boutilier, Abigail, Moore, Christopher R., Napier, William M., Parlier, Jennifer, Tankersley, Kenneth B., Thomas, Brian C., Wittke, James H., West, Allen and Kennett, James P. (2018) Extraordinary Biomass-Burning Episode and Impact Winter Triggered by the Younger Dryas Cosmic Impact ∼12,800 Years Ago. 2. Lake, Marine, and Terrestrial Sediments. The Journal of Geology, 126 (2). pp. 185-205. ISSN 0022-1376

Franke, Peter M., Huntley, Brian and Parnell, Andrew (2018) Frequency selection in paleoclimate time series: A model-based approach incorporating possible time uncertainty. Environmetrics, 29 (e2492). ISSN 1180-4009

Howard, Emma, Meehan, Maria and Parnell, Andrew (2018) Quantifying participation in, and the effectiveness of, remediating assessment in a university mathematics module. Assessment & Evaluation in Higher Education, 44 (1). pp. 97-110. ISSN 0260-2938

Sweeney, James, Salter-Townshend, Michael, Edwards, Tamsin, Buck, Caitlin E. and Parnell, Andrew (2018) Statistical challenges in estimating past climate changes. WIREs Computational Statistics, 10 (e1437). ISSN 1939-0068

Dura, Tina, Horton, Benjamin P., Cisternas, Marco, Ely, Lisa L., Hong, Isabel, Nelson, Alan R., Wesson, Robert L., Pilarczyk, Jessica E., Parnell, Andrew and Nikitina, Daria (2017) Subduction zone slip variability during the last millennium, south-central Chile. Quaternary Science Reviews, 175. pp. 112-137. ISSN 0277-3791

Soh, Wuu Kuang, Wright, I.J., Bacon, Karen, Lenz, T.I., Steinthorsdottir, Margret, Parnell, Andrew and McElwain, Jennifer C. (2017) Corrigendum: Palaeo leaf economics reveal a shift in ecosystem function associated with the end-Triassic mass extinction event. Nature Plants, 3. p. 17126. ISSN 2055-026X

Soh, Wuu Kuang, Wright, I.J., Bacon, Karen, Lenz, T.I., Steinthorsdottir, Margret, Parnell, Andrew and McElwain, Jennifer C. (2017) Palaeo leaf economics reveal a shift in ecosystem function associated with the end-Triassic mass extinction event. Nature Plants, 3. p. 17104. ISSN 2055-026X

Hoffman, Jeremy S., Clarke, Peter U., Parnell, Andrew and He, Feng (2017) Regional and global sea-surface temperatures during the last interglaciation. Science, 355 (6322). pp. 276-279. ISSN 0036-8075

Rubin, Charles M., Horton, Benjamin P., Sieh, Kerry, Pilarczyk, Jessica E., Daly, Patrick, Ismail, Nazli and Parnell, Andrew (2017) Highly variable recurrence of tsunamis in the 7,400 years before the 2004 Indian Ocean tsunami. Nature Communications, 8 (16019). ISSN 2041-1723

Clowry, Julianne, Sheridan, Juliette, Healy, R., Deady, S., Keegan, Denise, Byrne, K., Cullen, Garret, Mulcahy, H., Comber, Harry, Parnell, Andrew, Doherty, Glen and Lally, Aoife (2017) Increased non‐melanoma skin cancer risk in young patients with inflammatory bowel disease on immunomodulatory therapy: a retrospective single‐centre cohort study. Journal of the European Academy of Dermatology and Venereology, 31 (6). pp. 978-985. ISSN 0926-9959

McParland, Damien, Baron, Szymon, O'Rourke, Sarah, Dowling, Denis, Ahearn, Eamonn and Parnell, Andrew (2017) Prediction of tool-wear in turning of medical grade cobalt chromium molybdenum alloy (ASTM F75) using non-parametric Bayesian models. Journal of Intelligent Manufacturing. pp. 1-12. ISSN 0956-5515

Wright, Alexander J., Edwards, Robin J., van de Plaasche, Orson, Blaauw, Maarten, Parnell, Andrew, van der Borge, Klaas, de Jonge, A., Roe, Helen M., Selby, Katherine and Black, Stuart (2017) Reconstructing the accumulation history of a saltmarsh sediment core: which age-depth model is best? Quaternary Geochronology, 39. pp. 35-67. ISSN 1871-1014

Kemp, Andrew C., Hill, Troy D., Vane, Christopher H., Cahill, Niamh, Orton, Philip M., Talke, Stefan A., Parnell, Andrew, Sanborn, Kelsey and Hartig, Ellen K. (2017) Relative sea-level trends in New York City during the past 1500 years. Holocene, 27 (8). pp. 1169-1186. ISSN 0959-6836

Hegarty, Avril, Stanley, Gerry, Kashdan, Eugene, Hodgson, Jim and Parnell, Andrew (2017) Repeatability analysis of airborne electromagnetic surveys. Mathematics-in-industry Case Studies, 7 (6). ISSN 1913-4967

Osman, Mugtaba, Parnell, Andrew and Haley, Clifford (2017) “Suicide shall cease to be a crime”: suicide and undetermined death trends 1970–2000 before and after the decriminalization of suicide in Ireland 1993. Irish Journal of Medical Science, 186 (1). pp. 201-205. ISSN 0021-1265

Mcmahon, Barry J., Purvis, Gordon, Sheridan, Helen, Siriwardena, Gavin M. and Parnell, Andrew (2017) A novel method for quantifying overdispersion in count data and its application to farmland birds. International Journal of Avian Science (IBIS), 159 (2). pp. 406-414. ISSN 0019-1019

Cahill, Niamh, Kemp, Andrew C., Horton, Benjamin P. and Parnell, Andrew (2016) A Bayesian hierarchical model for reconstructing relative sea level: from raw data to rates of change. Climate of the Past, 12 (2). pp. 525-542. ISSN 1814-9332

Parnell, Andrew (2016) A Bayesian multinomial regression model for paleoclimate reconstruction with time uncertainty. Environmetrics, 27 (7). pp. 431-433. ISSN 1180-4009

Rue-Albrecht, Kévin, McGettigan, Paul A., Hernández, Belinda, Nalpas, Nicolas C., Magee, David A., Parnell, Andrew, Gordon, Stephen V. and MacHugh, David E. (2016) GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data. BMC Bioinformatics, 17 (1). pp. 1-12. ISSN 1471-2105

Parnell, Andrew, Haslett, John, Sweeney, James, Doan, Thinh K, Allen, Judy R. M. and Huntley, Brian (2016) Joint palaeoclimate reconstruction from pollen data via forward models and climate histories. Quaternary Science Reviews, 151 (2016). pp. 1-30. ISSN 0277-3791

Clancy, Colm, O'Sullivan, John, Sweeney, Conor, Dias, Frederic and Parnell, Andrew (2016) Spatial Bayesian hierarchical modelling of extreme sea states. Ocean Modelling, 107. pp. 1-13. ISSN 1463-5003

Cahill, Niamh, Rahmstorf, Stefan and Parnell, Andrew (2015) Change points of global temperature. Environmental Research Letters, 10. ISSN 1748-9326

Cahill, Niamh, Kemp, Andrew C., Horton, Benjamin P. and Parnell, Andrew (2015) Modeling sea-level change using errors-in-variables integrated gaussian processes. Annals of Applied Statistics, 9 (2). pp. 547-571. ISSN 1932-6157

Brain, Matthew J, Kemp, Andrew C., Horton, Benjamin P., Culver, Stephen J., Parnell, Andrew and Cahill, Niamh (2015) Quantifying the contribution of sediment compaction to late Holocene salt-marsh sea-level reconstructions, North Carolina, USA. Quaternary Research, 83 (1). pp. 41-51. ISSN 0033-5894

Kemp, Andrew C., Hawkes, Andrea D., Donnelly, Jeffrey P., Vane, Christopher H., Horton, Benjamin P., Hill, Troy D., Anisfeld, Shimon C., Parnell, Andrew and Cahill, Niamh (2015) Relative sea-level change in Connecticut (USA) during the last 2200 yrs. Earth and Planetary Science Letters, 428. pp. 217-229. ISSN 0012-821X

Parnell, Andrew, Sweeney, James, Doan, Thinh K., Salter-Townshend, Michael, Allen, Judy R. M., Huntley, Brian and Haslett, John (2014) Bayesian Inference for Palaeoclimate with time Uncertainty and Stochastic Volatility. Journal of the Royal Statistical Society Series C: Applied Statistics, 64 (1). pp. 115-138. ISSN 0035-9254

Kemp, Andrew C., Bernhardt, Christopher E., Horton, Benjamin P., Kopp, Robert E., Vane, Christopher H., Peltier, W. Richard, Hawkes, Andrea D., Donnelly, Jeffrey P., Parnell, Andrew and Cahill, Niamh (2014) Late Holocene sea- and land-level change on the U.S. southeastern Atlantic coast. Marine Geology, 357. pp. 90-100. ISSN 0025-3227

Hernández, Belinda, Parnell, Andrew and Pennington, Stephen R. (2014) Why have so few proteomic biomarkers “survived” validation? (Sample size and independent validation considerations). Proteomics, 14 (13-14). pp. 1587-1592. ISSN 1615-9853

Hubbard, Alan, Franco-Trecu, Valentina, Drago, Massimiliano, Riet-Sapriza, Federico G., Parnell, Andrew, Frau, Rosina and Inchausti, Pablo (2013) Bias in Diet Determination: Incorporating Traditional Methods in Bayesian Mixing Models. PLoS ONE, 8 (11). pp. 1-8. ISSN 1932-6203

Viana, Mafalda, Jackson, Andrew L., Graham, Norman and Parnell, Andrew (2013) Disentangling spatio‐temporal processes in a hierarchical system: a case study in fisheries discards. Ecography, 36 (5). pp. 569-578. ISSN 0906-7590

Kemp, Andrew C., Horton, Benjamin P., Vane, Christopher H., Bernhardt, Christopher E., Corbett, D. Reide, Engelhart, Simon E., Anisfeld, Shimon C, Parnell, Andrew and Cahill, Niamh (2013) Sea-level change during the last 2500 years in New Jersey, USA. Quaternary Science Reviews, 81. pp. 90-104. ISSN 0277-3791

Brain, Matthew J., Long, Antony J., Woodroffe, Sarah A., Petley, David N., Milledge, David G. and Parnell, Andrew (2012) Modelling the effects of sediment compaction on salt marsh reconstructions of recent sea-level rise. Earth and Planetary Science Letters, 345- (348). pp. 180-193. ISSN 0012821X

Jackson, Andrew L., Inger, Richard, Parnell, Andrew and Bearhop, Stuart (2011) Comparing isotopic niche widths among and within communities: SIBER - Stable Isotope Bayesian Ellipses in R. Journal of Animal Ecology, 80 (3). pp. 595-602. ISSN 0021-8790

Parnell, Andrew, Buck, Caitlin E. and Doan, Thinh K. (2011) A review of statistical chronology models for high-resolution, proxy-based Holocene palaeoenvironmental reconstruction. Quaternary Science Reviews, 30 (21-22). pp. 2948-2960. ISSN 0277-3791

Inger, Richard, McDonald, Robbie A., Rogowski, David, Jackson, Andrew L., Parnell, Andrew, Jane Preston, S., Harrod, Chris, Goodwin, Claire, Griffiths, David, Dick, Jaimie T.A., Elwood, Robert W., Newton, Jason and Bearhop, Stuart (2010) Do non‐native invasive fish support elevated lamprey populations? Journal of Applied Ecology, 47 (1). pp. 121-129. ISSN 0021-8901

Haslett, John and Parnell, Andrew (2008) A Simple Monotone Process with Application to Radiocarbon-Dated Depth Chronologies. Journal of the Royal Statistical Society Series C: Applied Statistics, 57 (4). pp. 399-418. ISSN 0035-9254

Parnell, Andrew, Haslett, J., Allen, J.R.M., Buck, C.E. and Huntley, B. (2008) A flexible approach to assessing synchroneity of past events using Bayesian reconstructions of sedimentation history. Quaternary Science Reviews, 27 (19-20). pp. 1872-1885. ISSN 0277-3791

Monograph

Haslett, John, Parnell, Andrew and Sweeney, James (2018) A general framework for modelling zero inflation. Working Paper. arXiv.

Hernandez, Belinda, Raftery, Adrianm,, Pennington, Stephen R and Parnell, Andrew (2017) Bayesian Additive Regression Trees using Bayesian model averaging. Working Paper. arXiv.

Conference or Workshop Item

Copeland, Cillian, Howard, Emma, Meehan, Maria and Parnell, Andrew (2018) Engaging with feedback: How do students remediate errors on their weekly quiz. In: INDRUM 2018, INDRUM Network, Apr 2018, Kristiansand, Norway.

Howard, Emma, Meehan, Maria and Parnell, Andrew (2017) Identifying the reasons behind students’ engagement patterns. In: CERME 10 - Tenth Congress of the European Society for Research in Mathematics Education, 1-5 Feb 2017, Dublin, Ireland.