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Number of items: **79**.

Duarte, Delfim and Hawkins, Edwin D. and Akinduro, Olufolake and Ang, Heather and De Filippo, Katia and Kong, Isabella Y. and Haltalli, Myriam and Ruivo, Nicola and Straszkowski, Lenny and Vervoort, Stephin J. and McLean, Catriona and Weber, Tom S. and Korshed, Reema and Pirillo, Chiara and Wei, Andrew and Ramasamy, Saravana K. and Kusumbe, Anjali P. and Duffy, Ken R. and Adams, Ralf H. and Purton, Louise E. and Carlin, Leo M. and Lo Celso, Christina
(2018)
*Inhibition of Endosteal Vascular Niche Remodeling Rescues Hematopoietic Stem Cell Loss in AML.*
Cell Stem Cell, 22 (1).
pp. 64-77.
ISSN 1875-9777

Akinduro, Olufolake and Weber, Tom S. and Ang, Heather and Haltalli, Myriam and Ruivo, Nicola and Duarte, Delfim and Rashidi, N.M. and Hawkins, Edwin D. and Duffy, Ken R. and Lo Celso, Christina
(2018)
*Proliferation dynamics of acute myeloid leukaemia and haematopoietic progenitors competing for bone marrow space.*
Nature Communications, 9 (519).
ISSN 2041-1723

Cui, Ying and Medard, Muriel and Yeh, Edmund and Leith, Douglas J. and Li, Fan and Duffy, Ken R.
(2017)
*A Linear Network Code Construction for General Integer Connections Based on the Constraint Satisfaction Problem.*
IEEE/ACM Transactions on Networking, 25 (6).
pp. 3441-3454.
ISSN 1063-6692

Feizi, Soheil and Makhdoumi, Ali and Duffy, Ken R. and Kellis, Manolis and Medard, Muriel
(2017)
*Network Maximal Correlation.*
IEEE Transactions on Network Science and Engineering, 4 (4).
pp. 229-247.
ISSN 2327-4697

Calmon, Flavio P. and Makhdoumi, Ali and Medard, Muriel and Varia, Mayank and Christiansen, Mark M. and Duffy, Ken R.
(2017)
*Principal Inertia Components and Applications.*
IEEE Transactions on Information Theory, 63 (8).
pp. 5011-5038.
ISSN 1557-9654

Peters, Kelsey C. and Swaminathan, Harish and Sheehan, Jennifer and Duffy, Ken R. and Lun, Desmond S. and Grgicak, Catherine
(2017)
*Production of high-fidelity electropherograms results in improved and consistent DNA interpretation: Standardizing the forensic validation process.*
Forensic Science International: Genetics, 31.
pp. 160-170.
ISSN 1878-0326

Perie, Leila and Duffy, Ken R.
(2016)
*Retracing the in vivo haematopoietic tree using single‐cell methods.*
FEBS Letters, 590 (22).
pp. 4068-4083.
ISSN 0014-5793

Weber, Tom S. and Dukes, Mark and Miles, Denise C. and Glaser, Stefan P. and Naik, Shalin H. and Duffy, Ken R.
(2016)
*Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system.*
BMC Systems Biology, 10 (43).
ISSN 1752-0509

Marchingo, J.M. and Prevedello, G. and Kan, A. and Hodgkin, Philip D. and Duffy, Ken R.
(2016)
*T-cell stimuli independently sum to regulate
an inherited clonal division fate.*
Nature Communications, 7 (13540).
ISSN 2041-1723

Perie, Leila and Duffy, Ken R. and Kok, Lianne and de Boer, Rob J. and Schumacher, Ton N.
(2015)
*The Branching Point in Erythro-Myeloid
Differentiation.*
Cell, 163.
pp. 1655-1662.
ISSN 0092-8674

Cui, Ying and Medard, Muriel and Yeh, Edmund and Leith, Douglas J. and Duffy, Ken R.
(2015)
*A Linear Network Code Construction for General Integer Connections Based on the Constraint Satisfaction Problem.*
Proceeding of Global Communications Conference (GLOBECOM).

Christiansen, Mark M. and Duffy, Ken R. and du Pin Calmon, Flavio and Medard, Muriel
(2015)
*Multi-user guesswork and brute force security.*
IEEE Transactions on Information Theory, 61 (12).
pp. 6876-6886.
ISSN 0018-9448

Monich, Ulrich J. and Duffy, Ken R. and Medard, Muriel and Cadambe, Viveck and Alfonse, Lauren E. and Grgicak, Catherine
(2015)
*Probabilistic characterisation of baseline noise in STR profiles.*
Forensic Science International: Genetics, 19.
pp. 107-122.
ISSN 1878-0326

Marchingo, J.M. and Kan, A. and Sutherland, Robyn M. and Duffy, Ken R.
(2014)
*Antigen affinity, costimulation, and
cytokine inputs sum linearly to
amplify T cell expansion.*
Science, 346 (6213).
pp. 1123-1127.
ISSN 0036-8075

Perie, Leila and Hodgkin, Philip D. and Naik, Shalin H. and Schumacher, Ton N. and de Boer, Rob J. and Duffy, Ken R.
(2014)
*Determining Lineage Pathways
from Cellular Barcoding Experiments.*
Cell Reports, 6.
pp. 617-624.
ISSN 2211-1247

Duffy, Ken R. and Meyn, Sean P.
(2014)
*Large deviation asymptotics for busy periods.*
Stochastic Systems, 4 (1).
pp. 300-319.
ISSN 1946-5238

Hodgkin, Philip D. and Dowling, Mark R. and Duffy, Ken R.
(2014)
*Why the immune system takes its chances with randomness.*
Nature Reviews Immunology, 14 (10).
p. 711.
ISSN 1474-1741

Fang, Minyu and Malone, David and Duffy, Ken R. and Leith, Douglas J.
(2013)
*Decentralised Learning MACs for Collision-free
Access in WLANs.*
Wireless Networks, 19 (1).
pp. 83-98.
ISSN 1022-0038

Duffy, Ken R. and Borgenave, C. and Leith, Douglas J.
(2013)
*Decentralized constraint satisfaction.*
IEEE/ACM Transactions on Networking, 21 (4).
pp. 1298-1308.
ISSN 1063-6692

Christiansen, Mark M. and Duffy, Ken R.
(2013)
*Guesswork, large deviations and Shannon entropy.*
IEEE Transactions on Information Theory, 59 (2).
pp. 796-802.
ISSN 0018-9448

Duffy, Ken R. and Wellard, Cameron J. and Markham, John F. and Zhou, Jie H.S. and Holmberg, Ross and Hawkins, Edwin D. and Hasbold, Jhagvaral and Dowling, Mark R. and Hodgkin, Philip D.
(2012)
*Activation-Induced B Cell Fates Are Selected by Intracellular Stochastic Competition.*
Science, 335 (6066).
pp. 338-341.
ISSN 0036-8075

Huang, K.D. and Duffy, Ken R. and Malone, David
(2012)
*H-RCA: 802.11 Collision-aware Rate Control.*
IEEE/ACM Transactions on Networking, 21 (4).
pp. 1021-1034.
ISSN 1063-6692

Duffy, Ken R. and Hodgkin, Philip D.
(2012)
*Intracellular competition for fates in the immune system.*
Trends in Cell Biology, 22 (9).
pp. 457-464.
ISSN 0962-8924

Huang, K.D. and Malone, David and Duffy, Ken R.
(2011)
*The 802.11g 11 Mb/s rate is more robust than 6
Mb/s.*
IEEE Transactions on Wireless Communications, 10 (4).
pp. 1015-1020.
ISSN 1536-1276

Duffy, Ken R. and Meyn, Sean P.
(2011)
*Estimating Loynes’ exponent.*
Queueing Systems, 68 (3/4).
pp. 285-293.
ISSN 0257-0130

Duffy, Ken R. and Macci, Claudio and Torrisi, Giovanni Luca
(2011)
*On the large deviations of a class of modulated additive
processes.*
ESAIM: Probability and Statistics.
pp. 1-35.
ISSN 1292-8100

Duffy, Ken R. and Macci, Claudio and Torrisi, Giovanni Luca
(2011)
*Sample path large deviations for order statistics.*
Journal of Applied Probability, 48 (1).
pp. 238-257.
ISSN 0021-9002

Cui, Ying and Medard, Muriel and Yeh, Edmund and Leith, Douglas J. and Duffy, Ken R.
(2011)
*Sample path large deviations of Poisson shot noise with heavy tail
semi-exponential distributions.*
Journal of Applied Probability, 48 (3).
pp. 688-698.
ISSN 0021-9002

Leith, Douglas J. and Subramanian, Vijay G. and Duffy, Ken R.
(2010)
*Log-Convexity of Rate Region in 802.11e WLANs.*
IEEE Communications Letters, 14 (1).
pp. 57-59.
ISSN 1089-7798

Markham, John F. and Wellard, Cameron J. and Hawkins, Edward D. and Duffy, Ken R. and Hodgkin, Philip D.
(2010)
*A minimum of two distinct heritable factors are required to
explain correlation structures in proliferating lymphocytes.*
Journal of the Royal Society Interface, 7 (48).
pp. 1049-1059.
ISSN 1742-5689

Duffy, Ken R.
(2010)
*Mean field Markov models of wireless local area networks.*
Markov Processes and Related Fields, 16 (2).
pp. 295-328.
ISSN 1024-2953

Duffy, Ken R. and Meyn, Sean P.
(2010)
*Most likely paths to error
when estimating the mean of a reflected random walk.*
Performance Evaluation.
ISSN 0166-5316

Huang, Kaidi and Duffy, Ken R. and Malone, David
(2010)
*On the Validity of IEEE 802.11 MAC Modeling
Hypotheses.*
Networking, IEEE/ACM Transactions on .
ISSN 1063-6692

Duffy, Ken R. and Subramanian, Vijay G.
(2009)
*On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics.*
Journal of Mathematical Biology, 59 (2).
pp. 255-285.
ISSN 1432-1416

Subramanian, Vijay G. and Duffy, Ken R. and Leith, Douglas J.
(2009)
*Existence and uniqueness of fair rate allocations in lossy wireless networks.*
IEEE Transactions on Wireless Communications, 8 (7).
pp. 3401-3406.
ISSN 1536-1276

Huang, K.D. and Duffy, Ken R.
(2009)
*On a Buffering Hypothesis in 802.11 Analytic Models.*
IEEE Communications Letters, 13 (5).
pp. 312-314.
ISSN 1089-7798

Duffy, Ken R. and Malone, David
(2008)
*Logarithmic asymptotics for a single-server processing
distinguishable sources.*
Mathematical Methods of Operations Research , 68 (3).
pp. 509-537.
ISSN 1432-5217

Subramanian, Vijay G. and Duffy, Ken R. and Turner, Marian L. and Hodgkin, Philip D.
(2008)
*Determining the expected variability of immune responses using the Cyton Model.*
Journal of Mathematical Biology, 56 (6).
pp. 861-892.
ISSN 1432-1416

Duffy, Ken R. and O’Connell, N. and Sapozhnikov, A.
(2008)
*Complexity analysis of a decentralised graph colouring
algorithm.*
Information Processing Letters.
ISSN 0020-0190

Duffy, Ken R. and Sapozhnikov, Artem
(2008)
*The large deviation principle for the On/Off Weibull Sojourn
Process.*
Journal of Applied Probalility, 45 (1).
pp. 107-117.
ISSN 0021-9002

Duffy, Ken R. and Lobunets, Olena and Suhov, Yuri
(2007)
*Loss aversion, large deviation preferences and optimal portfolio weights for some classes of return processes.*
Physica A: Statistical Mechanics and its Applications, 378 (2).
pp. 408-422.
ISSN 0378-4371

Duffy, Ken R. and King, Christopher and Malone, David
(2007)
*Ambiguities in estimates of critical exponents for long-range
dependent processes.*
Physica A: Statistical Mechanics and its Applications , 377 (1).
pp. 43-52.
ISSN 0378-4371

Malone, David and Duffy, Ken R. and Leith, Douglas J.
(2007)
*Modeling the 802.11 distributed coordination function in nonsaturated heterogeneous conditions.*
IEEE/ACM Transactions on Networking , 15 (1).
pp. 159-172.
ISSN 1063-6692

Duffy, Ken R. and Ganesh, Ayalvadi J.
(2007)
*Modeling the Impact of Buffering on 802.11.*
IEEE Communications Letters, 11 (2).
pp. 219-221.
ISSN 1089-7798

Malone, David and Duffy, Ken R. and King, Christopher
(2007)
*Some Remarks on LD Plots for Heavy-Tailed Traffic. (Editorial Note).*
AM SIGCOMM Computer Communication Review, 37 (1).
pp. 41-42.
ISSN 0146-4833

Duffy, Ken R. and Pulè, J.V.
(2007)
*John T. Lewis (1932-2004).*
Markov Processes and Related Fields, 13 (1).
pp. 3-19.
ISSN 1024-2953

Duffy, Ken R. and Pechersky, E.A. and Suhov, Y.M and Vvedenskaya, N.D.
(2007)
*Using estimated entropy in a queueing system with dynamic
routing.*
Markov Process and Related Fields, 13 (1).
pp. 57-84.
ISSN 1024-2953

Duffy, Ken R. and Leith, Douglas J. and Li, Tianji and Malone, David
(2006)
*Modeling 802.11 Mesh Networks.*
IEEE Communications Letters, 10 (8).
pp. 635-637.
ISSN 1089-7798

Duffy, Ken R. and Metcalfe, Anthony P.
(2005)
*How to estimate a cumulative process’s rate-function.*
Journal of Applied Probability, 42 (4).
pp. 1044-1052.
ISSN 0021-9002

Duffy, Ken R. and Malone, David and Leith, Douglas J.
(2005)
*Modelling 802.11 Wireless Links.*
Proceedings of the 44th IEEE Conference on Decision and Control, and the European Control Conference 2005 Seville, Spain. CDC-ECC '05. ISBN 0780395670 .
pp. 6952-6957.

Duffy, Ken R. and Malone, David and Leith, Douglas J.
(2005)
*Modeling the 802.11 distributed coordination function in non-saturated conditions.*
IEEE Communications Letters, 9 (8).
pp. 715-717.
ISSN 1089-7798

Duffy, Ken R. and Metcalfe, Anthony P.
(2005)
*The large deviations of estimating rate-functions.*
Journal of Applied Probability, 42 (1).
pp. 267-274.
ISSN 0021-9002

Duffy, Ken R. and Sullivan, Wayne G.
(2004)
*Logarithmic asymptotics for unserved messages at a FIFO.*
Markov Process and Related Fields, 10 (1).
pp. 175-189.
ISSN 1024-2953

Duffy, Ken R. and Dukes, W.M.B.
(2004)
*On Knuth’s Generalization of Banach’s Matchbox Problem.*
Mathematical Proceedings of the Royal Irish Academy, 104A.
pp. 107-118.
ISSN 1393-7197

Duffy, Ken R. and Rodgers-Lee, Mark
(2004)
*Some Useful Functions for Functional Large Deviations.*
Stochastics and Stochastics Reports, 76 (3).
pp. 267-279.
ISSN 1029-0346

Duffy, Ken R. and Lewis, John T. and Sullivan, Wayne G.
(2003)
*Logarithmic asymptotics for the supremum of a stochastic process.*
Annals of Applied Probability, 13 (2).
pp. 430-445.
ISSN 1050-5164

Györfi, Lásló and Rácz, András and Duffy, Ken R. and Lewis, John T. and Toomey, Fergal
(2000)
*Distribution-free confidence intervals for measurements of effective bandwidth.*
Journal of Applied Probability, 37 (1).
pp. 224-2235.
ISSN 0021-9002

Beirami, Ahmad and Calderbank, Robert and Duffy, Ken R. and Medard, Muriel
(2015)
*Quantifying Computational Security Subject to
Source Constraints, Guesswork and Inscrutability.*
In:
IEEE International Symposium on Information Theory (ISIT), 2015.
IEEE, pp. 2757-2761.
ISBN 9781467377041

Bianchi, Giuseppe and Duffy, Ken R. and Leith, Douglas J. and Shneer, Vsevolod
(2012)
*Modeling Conservative Updates in Multi-Hash
Approximate Count Sketches.*
In:
Proceedings of the 2012 24th International Teletraffic Congress (ITC 24).
ITCP, pp. 17-24.
ISBN 978-0-9836283-4-7

Clifford, Peter and Duffy, Ken R. and Foy, John and Leith, Douglas J. and Malone, David
(2006)
*Modeling 802.11e for data traffic parameter design.*
In:
2006 4th International Symposium on Modeling and Optimization in Mobile, Ad Hoc and Wireless Networks, April 3-7, Boston, Massachusetts. WiOPT 2006.
IEEE, pp. 1-10.
ISBN 0-7803-9549-2

Duffy, Ken R. and Li, Jianje and Medard, Muriel
(2018)
*Capacity-achieving Guessing Random Additive
Noise Decoding (GRAND).*
Working Paper.
arXiv.

Rezaee, Arman and Beirami, Ahmad and Makhdoumi, Ali and Medard, Muriel and Duffy, Ken R.
(2018)
*Guesswork Subject to a Total Entropy Budget.*
Working Paper.
arXiv.

Duffy, Ken R. and Williamson, Brendan D.
(2015)
*Estimating large deviation rate functions.*
Working Paper.
arXiv.

Calmon, Flavio P. and Medard, Muriel and Varia, Mayank and Duffy, Ken R. and Christiansen, Mark M. and Zeger, Linda M.
(2015)
*Hiding Symbols and Functions:
New Metrics and Constructions for Information-Theoretic Security.*
Working Paper.
arXiv.

Weber, Tom S. and Perie, Leila and Duffy, Ken R.
(2015)
*Inferring average generation via division-linked labeling.*
Working Paper.
arXiv.

Calmon, Flavio P. and Varia, Mayank and Medard, Muriel and Christiansen, Mark M. and Duffy, Ken R. and Tessaro, Stefano
(2013)
*Bounds on inference.*
Working Paper.
arXiv.org.

Christiansen, Mark M. and Duffy, Ken R. and Calmon, Flavio du Pin and Medard, Muriel
(2013)
*Brute force searching, the typical set and Guesswork.*
Working Paper.
arXiv.org.

Duffy, Ken R. and Malone, David and Pechersky, E.A. and Suhov, Y.M and Vvedenskaya, N.D.
(2004)
*Large deviations provide good approximation to
queueing system with dynamic routing. Technical Paper DIAS-STP-04-15.*
Technical Report.
Dublin Institute for Advanced Studies.

Duffy, Ken R. and King, Christopher and Malone, David
(2002)
*Long-range dependence as a consequence of balanced queueing.*
Working Paper.
Communications Network Research Institute.

Beirami, Ahmad and Calderbank, Robert and Duffy, Ken R. and Medard, Muriel
(2015)
*Computational Security Subject to
Source Constraints, Guesswork and Inscrutability.*
In: IEEE Symposium on Information Theory, 14-19 June 2015, Hong Kong.

Beirami, Ahmad and Calderbank, Robert and Christiansen, Mark M. and Duffy, Ken R. and Makhdoumi, Ali and Medard, Muriel
(2015)
*A Geometric Perspective on Guesswork.*
In: 53rd Annual Allerton Conference on Communication, Control, and Computing, 30 September - 2 October 2015, Monticello, IL.

Cui, Ying and Medard, Muriel and Yeh, Edmund and Leith, Douglas J. and Duffy, Ken R.
(2015)
*Optimization-Based Linear Network Coding for
General Connections of Continuous Flows.*
In: IEEE International Conference on Communications, 8-12 June 2015, London.

Monich, Ulrich J. and Grgicak, Catherine and Cadambe, Viveck and Wu, Jason Yonglin and Wellner, Genevieve and Duffy, Ken R. and Medard, Muriel
(2014)
*A Signal Model for Forensic DNA Mixtures.*
In: Asilomar Conference on Signals, Systems & Computers, 2-5 November 2014, Pacific Grove, California.

Christiansen, Mark M. and Duffy, Ken R. and Calmon, Flavio du Pin and Medard, Muriel
(2013)
*Guessing a password over a wireless channel (on
the effect of noise non-uniformity).*
In: Asilomar Conference on Signals, Systems & Computers (2013), 3-6 November 2013, Pacific Grove, California.

Calmon, Flavio du Pin and Medard, Muriel and Zeger, Linda M. and Barros, Joao and Christiansen, Mark M. and Duffy, Ken R.
(2012)
*Lists that are smaller than their parts:
A coding approach to tunable secrecy.*
In: IEEE 50th Annual Allerton Conference on Communication, Control, and Computing, 1-5 October 2012, Allerton Retreat Center Monticello, Illinois.

Huang, K.D. and Duffy, Ken R. and Malone, David and Leith, Douglas J.
(2008)
*Investigating the validity of IEEE 802.11 MAC modeling hypotheses.*
In: IEEE 19th International Symposium on Personal, Indoor and Mobile Radio Communications, 2008. PIMRC 2008, 15th - 18th September 2008, Cannes.

Duffy, Ken R. and Leith, Douglas J. and Li, T. and Malone, David
(2006)
*Improving Fairness in Multi-Hop Mesh Networks Using 802.11e.*
In: 4th International Symposium on Modeling and Optimization in Mobile, Ad Hoc and Wireless Networks, 2006, April 3-7, 2006, Boston, Massachusetts , USA.

Clifford, Peter and Duffy, Ken R. and Leith, Douglas J. and Malone, David
(2005)
*On improving voice capacity in 802.11 infrastructure networks.*
In: 2005 International Conference on Wireless Networks, Communications and Mobile Computing, 13-16 June 2005, Maui, HI.

Malone, David and Duffy, Ken R. and Leith, Douglas J.
(2005)
*Modeling the 802.11 Distributed Coordination
Function with Heterogenous Finite Load.*
In: Workshop on Resource Allocation in Wireless NETworks (RAWNET 2005), 3 April 2005, WiOpt, Trento.